PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 21098.4 Da PI: 8.0993 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2.1e-38 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+++C+lapyfp+e++++f n+hklFG+sn++k++k ++e +r++am+ l+++A+arardPv G+++++l+l++++++++ael+ XP_009127962.1 19 ACAACKYQRKKCTEHCILAPYFPQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDIAMTNLMFHANARARDPVWGVCKIMLDLKNKIACTQAELN 113 7********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_009127962.1 114 LIHQQ 118 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 20 | No hit | No description |
PROSITE profile | PS50891 | 24.207 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-35 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSLSKFHGGS SSCSSSATAC AACKYQRKKC TEHCILAPYF PQEKQNQFLN AHKLFGVSNI 60 TKFIKGVEEC QRDIAMTNLM FHANARARDP VWGVCKIMLD LKNKIACTQA ELNLIHQQNL 120 AMCRTIALQQ QFGCYSYGDL LEQGDEYLNI DGHVHQKQSV LNYEMFMEMP IKLEKEKVSM 180 DTRMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-25 | 9 | 120 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-25 | 9 | 120 | 1 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127962.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127962.1 | 1e-139 | PREDICTED: LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 4e-63 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A291LR36 | 1e-137 | A0A291LR36_BRARR; Transcription factor LBD7 | ||||
TrEMBL | M4CV17 | 1e-137 | M4CV17_BRARP; Uncharacterized protein | ||||
STRING | Bra008062.1-P | 1e-138 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 5e-58 | LOB domain-containing protein 7 |