PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126832.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 475aa    MW: 53680.9 Da    PI: 4.9319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-1122891697
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    l+l  +f+++h ++      l   d s ++W+vkl  ++++    l++GW+eF+  n   +gD++ F+++g++ f  +v v 
  XP_009126832.1 22 LTLDTEFLRNHTKV------LLTSDASDKTWKVKL--DGNR----LAGGWEEFAAVNSFSDGDVLAFRHNGDEIF--HVAVS 89
                    66777777777544......55577999*******..9999....***********************9998888..77665 PP
2B364.91.2e-20139236199
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+ + +++++l+++rl l+k+f   +   +  ++++ ++ l +e+gr+W++ l+ + +sg++ +++GW +F++angL +gD++ Fkl++ s++++
  XP_009126832.1 139 FLRARVTPYSLNKDRLDLSKDFKF-MlfdE--HKKPCEIYLANEKGRKWTLILSRNISSGAFNIRRGWANFCSANGLSQGDICNFKLSE-SGERP 229
                     6677899***************53.35544..446669****************9*******************************976.88889 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     v+ ++++
  XP_009126832.1 230 VLLLCSH 236
                     9999987 PP
3B366.15e-21282375599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++ +k+g+l+++  f++e g+k  +s+++tl +++gr+W+ +l++  ++++++++++kGW+e+++ang++++D++v++l+  +++++ +k++
  XP_009126832.1 282 EFTPNRFKTGQLTISSVFLRESGIK--TSMEITLLNKDGRKWSSYLQMsgQRGREMFYMRKGWREMCDANGVEVNDSFVLELIC-EDTTPIFKFH 373
                     568999****************988..799****************9966667777***************************9.8888999987 PP

                     -S CS
              B3  98 rk 99 
                     +k
  XP_009126832.1 374 SK 375
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.039192IPR003340B3 DNA binding domain
SMARTSM010191.3E-81092IPR003340B3 DNA binding domain
CDDcd100172.62E-62286No hitNo description
Gene3DG3DSA:2.40.330.106.0E-113089IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-103289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.495139236IPR003340B3 DNA binding domain
SMARTSM010199.6E-20139237IPR003340B3 DNA binding domain
PfamPF023622.6E-17139236IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-17140237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-15141235IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-15149235No hitNo description
Gene3DG3DSA:2.40.330.101.1E-15274374IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111278375IPR003340B3 DNA binding domain
SMARTSM010195.8E-20278376IPR003340B3 DNA binding domain
PfamPF023626.6E-21281375IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-15285378IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-14289374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVVPPKPSLF HWRFLTGGKP LLTLDTEFLR NHTKVLLTSD ASDKTWKVKL DGNRLAGGWE  60
EFAAVNSFSD GDVLAFRHNG DEIFHVAVSS ESDDDTDDSE SDESDDVDDV EDEDNNEGDI  120
LVEKNKKPEA DSSSGYSCFL RARVTPYSLN KDRLDLSKDF KFMLFDEHKK PCEIYLANEK  180
GRKWTLILSR NISSGAFNIR RGWANFCSAN GLSQGDICNF KLSESGERPV LLLCSHESGN  240
GHEDKEEEEE EEESPEADAV KICSVGGCSK EKNTTSRLLT SEFTPNRFKT GQLTISSVFL  300
RESGIKTSME ITLLNKDGRK WSSYLQMSGQ RGREMFYMRK GWREMCDANG VEVNDSFVLE  360
LICEDTTPIF KFHSKIENKE KGNTVEKTPE VSKRGRTRVL NRSNSNLKRK HPESCSVSDQ  420
VANVKQSILD TLNTIRHFRA ELETRENNLE ASLLEVDDLG ERILGISKIL NNNLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168182KKPCEIYLANEKGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126832.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X2
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A398AIY10.0A0A398AIY1_BRACM; Uncharacterized protein
STRINGBo1g011140.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-161B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]