PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126824.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 479aa    MW: 54154.2 Da    PI: 4.8105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.7e-1122891697
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    l+l  +f+++h ++      l   d s ++W+vkl  ++++    l++GW+eF+  n   +gD++ F+++g++ f  +v v 
  XP_009126824.1 22 LTLDTEFLRNHTKV------LLTSDASDKTWKVKL--DGNR----LAGGWEEFAAVNSFSDGDVLAFRHNGDEIF--HVAVS 89
                    66777777777544......55577999*******..9999....***********************9998888..77665 PP
2B364.91.2e-20143240199
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+ + +++++l+++rl l+k+f   +   +  ++++ ++ l +e+gr+W++ l+ + +sg++ +++GW +F++angL +gD++ Fkl++ s++++
  XP_009126824.1 143 FLRARVTPYSLNKDRLDLSKDFKF-MlfdE--HKKPCEIYLANEKGRKWTLILSRNISSGAFNIRRGWANFCSANGLSQGDICNFKLSE-SGERP 233
                     6677899***************53.35544..446669****************9*******************************976.88889 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     v+ ++++
  XP_009126824.1 234 VLLLCSH 240
                     9999987 PP
3B366.15.1e-21286379599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++ +k+g+l+++  f++e g+k  +s+++tl +++gr+W+ +l++  ++++++++++kGW+e+++ang++++D++v++l+  +++++ +k++
  XP_009126824.1 286 EFTPNRFKTGQLTISSVFLRESGIK--TSMEITLLNKDGRKWSSYLQMsgQRGREMFYMRKGWREMCDANGVEVNDSFVLELIC-EDTTPIFKFH 377
                     568999****************988..799****************9966667777***************************9.8888999987 PP

                     -S CS
              B3  98 rk 99 
                     +k
  XP_009126824.1 378 SK 379
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.039192IPR003340B3 DNA binding domain
SMARTSM010191.3E-81092IPR003340B3 DNA binding domain
CDDcd100172.94E-62286No hitNo description
Gene3DG3DSA:2.40.330.106.1E-113089IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-103289IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-17143240IPR003340B3 DNA binding domain
PROSITE profilePS5086315.495143240IPR003340B3 DNA binding domain
SMARTSM010199.6E-20143241IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-17144241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-15145239IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-15153239No hitNo description
Gene3DG3DSA:2.40.330.101.1E-15278378IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111282379IPR003340B3 DNA binding domain
SMARTSM010195.8E-20282380IPR003340B3 DNA binding domain
PfamPF023626.7E-21285379IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-15289382IPR015300DNA-binding pseudobarrel domain
CDDcd100176.76E-14293378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MVVPPKPSLF HWRFLTGGKP LLTLDTEFLR NHTKVLLTSD ASDKTWKVKL DGNRLAGGWE  60
EFAAVNSFSD GDVLAFRHNG DEIFHVAVSS ESDDDTDDSE SDESDDVDDV EDEDNNEDND  120
EGDILVEKNK KPEADSSSGY SCFLRARVTP YSLNKDRLDL SKDFKFMLFD EHKKPCEIYL  180
ANEKGRKWTL ILSRNISSGA FNIRRGWANF CSANGLSQGD ICNFKLSESG ERPVLLLCSH  240
ESGNGHEDKE EEEEEEESPE ADAVKICSVG GCSKEKNTTS RLLTSEFTPN RFKTGQLTIS  300
SVFLRESGIK TSMEITLLNK DGRKWSSYLQ MSGQRGREMF YMRKGWREMC DANGVEVNDS  360
FVLELICEDT TPIFKFHSKI ENKEKGNTVE KTPEVSKRGR TRVLNRSNSN LKRKHPESCS  420
VSDQVANVKQ SILDTLNTIR HFRAELETRE NNLEASLLEV DDLGERILGI SKILNNNLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172186KKPCEIYLANEKGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126824.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A398AIY10.0A0A398AIY1_BRACM; Uncharacterized protein
STRINGBo1g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-161B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]