PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126820.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 290aa    MW: 32861.9 Da    PI: 4.4727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-1511102399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ ++dv+ s+rlvlp ++  ++ ++++ ++t +l+ ++g+ W+vk     ++++ + +++GW++F  +n+  +gDf+ F++dg+++f  +v++
  XP_009126820.1  11 IIFNSKDVSLSQRLVLPSDYR-QY-YPTPLPQTAVLRKPEGNFWTVKW--AISQEEeISFGDGWSKFIAENDPIDGDFLQFSYDGSRSF--LVSI 99 
                     56667899999********96.55.3566999****************..444444499************************998888..**** PP

                     E-S CS
              B3  97 frk 99 
                     fr+
  XP_009126820.1 100 FRN 102
                     996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-185102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-176102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-157101No hitNo description
SMARTSM010192.5E-149103IPR003340B3 DNA binding domain
PfamPF023621.7E-139102IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6489103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-5194277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-4194277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVFTPYPDFL IIFNSKDVSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWTVKWAISQ  60
EEEISFGDGW SKFIAENDPI DGDFLQFSYD GSRSFLVSIF RNGLPVKPTA PVTIQDISDD  120
DEDKTAGDGD EKKEEEDYDQ NMIISLSLGS SDEDYDADKT VSEVNKADGT LKRGSSSQRI  180
RAQSIGDPEM YLDDPKNPCF IATSSSCRRM LVIAMQVIKD YDLKFDGTIK FIDGFGELEG  240
KIGNWKDRVV VYSWQEIYNR NHAKPGDVII CEILREGGVV RSIKAHFVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.10.0PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH11e-118Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A3P6A2J90.0A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBLM4DV740.0M4DV74_BRARP; Uncharacterized protein
STRINGBra020417.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-109B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]