PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126794.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 488aa    MW: 54499.9 Da    PI: 8.7268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-1119941296
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++  ++p+ f+++h +gk +e ++l+l++     +W+vkl  ++++    +++GW++F +a+ L+  D+++F+    +++e+ ++v
  XP_009126794.1 19 HNSSPIIPNAFFATHiEGK-NELTKLKLTSdACDTTWQVKL--NGRR----FADGWEDFSNAHCLRNDDVLLFR----EDGEMIFHV 94
                    455679*****99997544.45678998885777*******..8887....99*********************....555555554 PP
2B361.21.7e-19170260698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++s++l+++r+ l k+f++++g+ k    ++ + ++sg+sW + l+++k+ g+ ++++GW++F++an+Lk+g f  F+l + +++++ +k+++
  XP_009126794.1 170 VTSSNLRLNRVALTKSFTKANGLHKSW-CEINVINQSGKSWVMGLRHNKGTGQDYMRGGWRSFCRANKLKTGSFYRFELLR-TGTSPALKLCS 260
                     689******************988754.59*****************999999999**********************987.77778888886 PP
3B352.31.1e-16292388199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f +v++++++lks++l + ++fa+e+g+kk +  ++ l d++g +W   +      g+++l+kGW + +ka g+++gD+++++++++++++++++
  XP_009126794.1 292 FMTVTLKPYMLKSRQLHFQNSFARENGIKKGG--KVNLVDKDGGRWPSCVASGYVNGGFYLAKGWVGCCKASGINTGDTFTLQFVREKGKTPMLQ 384
                     7789999*******************999655..8***************77666667***************************999999*999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009126794.1 385 FVSK 388
                     8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-13696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-12698IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.165898IPR003340B3 DNA binding domain
CDDcd100172.53E-81095No hitNo description
SMARTSM010193.8E-1311100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-19158260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16160260IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-22165262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548165262IPR003340B3 DNA binding domain
PfamPF023622.9E-17170260IPR003340B3 DNA binding domain
CDDcd100171.01E-15172260No hitNo description
Gene3DG3DSA:2.40.330.105.6E-13286381IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.5E-17292389IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-13292388IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-15292388IPR003340B3 DNA binding domain
CDDcd100179.76E-10292379No hitNo description
PROSITE profilePS5086311.406292388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MATSPKSNAP FFVISLAGHN SSPIIPNAFF ATHIEGKNEL TKLKLTSDAC DTTWQVKLNG  60
RRFADGWEDF SNAHCLRNDD VLLFREDGEM IFHVTPSGRS FSKIHYISSS SDDSEADETD  120
DDDTDDDDDD DSEDDDGDDH GDETWDKVSD LRTRIKAESS STENSCILGV TSSNLRLNRV  180
ALTKSFTKAN GLHKSWCEIN VINQSGKSWV MGLRHNKGTG QDYMRGGWRS FCRANKLKTG  240
SFYRFELLRT GTSPALKLCS DNTSQRKCSK AKVSTNLNRE GGERSSMNRS KFMTVTLKPY  300
MLKSRQLHFQ NSFARENGIK KGGKVNLVDK DGGRWPSCVA SGYVNGGFYL AKGWVGCCKA  360
SGINTGDTFT LQFVREKGKT PMLQFVSKAK TKINSGTRFQ KKARVSVEGE PSHRTHASHK  420
STVGTNNVEC KQPLETISHQ VRQGIVNVLA DVRRFRSELE IKKQNLEAVL EEFDALGEKV  480
SEINKFFK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.147952e-78silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126794.10.0PREDICTED: B3 domain-containing protein REM3-like isoform X1
SwissprotQ8VZQ91e-167REM3_ARATH; B3 domain-containing protein REM3
TrEMBLA0A398AR360.0A0A398AR36_BRACM; Uncharacterized protein
STRINGBra011286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.11e-168B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]