PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126790.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 623aa    MW: 69471.6 Da    PI: 5.4696
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.5e-29199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  XP_009126790.1 199 KRRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 252
                     689******************.********************************8 PP
2Response_reg69.91.1e-23201271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  G
  XP_009126790.1  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHG 111
                     799********************.***************999999******************985344..57********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp++ +el++
  XP_009126790.1 112 ACDYLVKPVSLKELRN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1571622IPR017053Response regulator B-type, plant
SuperFamilySSF521729.39E-3117135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-3417169No hitNo description
SMARTSM004489.1E-2718129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.18119133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2120128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.63E-2042132No hitNo description
PROSITE profilePS5129413.463196255IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-29197256IPR009057Homeodomain-like
SuperFamilySSF466892.96E-20197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25199252IPR006447Myb domain, plants
PfamPF002491.2E-9201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MESVSNEEGR SDQFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREK  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
SLKELRNIWQ HVVKKNIGSY KKIIAPSRHL LPTSEYAPRG SGKRKEKADD SGDGDDDSDR  180
DDEEDGSEQD GDESSSRKKR RVVWSQELHQ KFVHAVQQLG LDKAVPKKIL DYMNIEGLTR  240
ENVASHLQKY RLYLKKLDEG QQHNMSQDAF GSRDSSYFHM AQLEGLRDYS STRQLSSSSL  300
LTRSSLTKFH PSVYSSVNLQ GSNSSSFIPP GHHQSSSSSA NPFGTYHSPL LARSQNVNLS  360
PLEPLQFPRS KCSPYMGDFK GIADRGIGSS FLDSRMSFGS SSTSLPCATS NNLMLQENFG  420
VSDGNQSCLN GLSSFPSHHS WQGNLKTTTR FPSHSLPLNH AFGQDQMTCG GTGLGDYNTS  480
LVSADSHVGV LQCEPPFLGD FMQNMNTHKW EEQNCTMMNN TFGNVDYPLP VDNNMVFRDN  540
NATRSKGVDD SLMMSPIEDS ATTLNSRECV GNVTMMDPEM RSSTKLENDL VDNQNDVFDD  600
IMNEMLKQDE NNGMVSVAAR FGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21195257163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240291e-46AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026881e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126790.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLM4DV470.0M4DV47_BRARP; Two-component response regulator
STRINGBra020390.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18