PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126176.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 371aa    MW: 41607.5 Da    PI: 7.5003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-174690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE+ ++v+a k++G   W++I +++g ++t+ q++s+ qk+
   XP_009126176.1 46 RERWTDEEHSKFVEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 90
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-164095IPR009057Homeodomain-like
PROSITE profilePS5129420.4574195IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-94392IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-164493IPR006447Myb domain, plants
SMARTSM007173.9E-134593IPR001005SANT/Myb domain
PfamPF002491.6E-134689IPR001005SANT/Myb domain
CDDcd001671.06E-94891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MASSPLTANV QGDDNRVEET AEIQLNDQVF YYAPKVRKPY TITKERERWT DEEHSKFVEA  60
LKLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVARESSG GNVSSLEPIV IPPPRPKRRP  120
MHPYPRKLGN EGDQTSRSVS PSERDNRSPT SVLSTVGSEA FGSSDSYSPN RSLSPVSSAS  180
PPAALATTAN APEEFETLKL ELFPAERLLN KELKKQSLKL FGKTVLVSDP DMSSSPTTST  240
TYCKSPIQPL PRKLSTSETF PMVINPQEER LSCWLQVPPK QEECLESEKG VQNEGSSTGS  300
NTGSVDDTGH TEKSSEPETM VCQWEFKPSE RSAFSELRRR NSESNSRGFG PYKKRKMVIE  360
AEEEQEIRIY L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337355RRRNSESNSRGFGPYKKRK
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126176.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531090.0AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126176.10.0PREDICTED: protein REVEILLE 1-like
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLM4E4A70.0M4E4A7_BRARP; Uncharacterized protein
STRINGBra023610.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-145MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]