PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009126091.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 404aa MW: 44797.1 Da PI: 5.1977

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009126091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.7	5.5e-19	312	362	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++d+s+ +lpi++AA++L +c+T++K+iCR+ + RWP+Rk++sl XP_009126091.1 312 TRSLTVKDMSELWDLPIEEAARKLRICTTAVKKICRRGEVFRWPRRKLASL 362 6789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.369	302	383	IPR003035	RWP-RK domain
Pfam	PF02042	7.9E-17	314	362	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MAGGDPKPIA LQDNEDEDIF YDAYSEEYLM SLMSNPNPNL MDLPFSKNTL LAPPPAPALE 60 INRTALLGDP SVSNPHGDTI KEYLKSLRID DGSLTVNTSD ALSDDINEYI DYTDLGEIGN 120 ENVGESGILQ ANAHVFAENT MNFETGGASA MPVPVITPTP TISQGLFLCT YCNLLRQLVH 180 ANGQEMMRLD LFGGIGYFCH AVIETRRFDG SNELRYQMNL KMEDVKKFIE DYCAARAAGG 240 FVIMQDTNAD FYQAMNACTT SSQLLMSTLP PRVDIPMSLA VPNESLNVAS VPPAVKGKPR 300 RQTNLSAQRK RTRSLTVKDM SELWDLPIEE AARKLRICTT AVKKICRRGE VFRWPRRKLA 360 SLREKVAALK IVVSQSTDAG VRARAEVKIE NFEKQIDAIY SKAR

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MAGGDPKPIA LQDNEDEDIF YDAYSEEYLM SLMSNPNPNL MDLPFSKNTL LAPPPAPALE  60
INRTALLGDP SVSNPHGDTI KEYLKSLRID DGSLTVNTSD ALSDDINEYI DYTDLGEIGN  120
ENVGESGILQ ANAHVFAENT MNFETGGASA MPVPVITPTP TISQGLFLCT YCNLLRQLVH  180
ANGQEMMRLD LFGGIGYFCH AVIETRRFDG SNELRYQMNL KMEDVKKFIE DYCAARAAGG  240
FVIMQDTNAD FYQAMNACTT SSQLLMSTLP PRVDIPMSLA VPNESLNVAS VPPAVKGKPR  300
RQTNLSAQRK RTRSLTVKDM SELWDLPIEE AARKLRICTT AVKKICRRGE VFRWPRRKLA  360
SLREKVAALK IVVSQSTDAG VRARAEVKIE NFEKQIDAIY SKAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	358	KKICRRGEVFRWPRRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18948	0.0	bud\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009126091.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240087	0.0	AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126091.1	0.0	PREDICTED: uncharacterized protein LOC103851025
TrEMBL	A0A3P6AMJ6	0.0	A0A3P6AMJ6_BRACM; Uncharacterized protein
STRING	Bo2g012920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-09	RWP-RK domain-containing protein