PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125867.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 627aa    MW: 69149.9 Da    PI: 7.6967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.2e-07278298526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + G Ck Gd C +aHg
  XP_009125867.1 278 PCPDFKK-GSCKQGDACEYAHG 298
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.68E-1731156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-1833171IPR020683Ankyrin repeat-containing domain
PfamPF127967.1E-1077146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.05977181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02777107IPR002110Ankyrin repeat
CDDcd002041.02E-1579170No hitNo description
PROSITE profilePS5008811.808112147IPR002110Ankyrin repeat
SMARTSM002487.2E-5112144IPR002110Ankyrin repeat
SMARTSM002483300148178IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.104.6E-5269300IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028278300IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5278298IPR000571Zinc finger, CCCH-type
SMARTSM00356110308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362308332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MCGLFKKLDT ENNALSHSLS KPMNDAAECE HSFSALLEFA ADNDVEGFKH QLSLVSSINQ  60
ASLWYRRQRL IKRMVVEQRT PLMVASLYGS LDVVKLILSF PETDLNLTCG PDKSTALHCA  120
ASGASVKALD VVKLLLSAGA DPNIIDTHGN TPVDVLVAPR GLRTVLEEIL KKDEDLSSSL  180
GSSFRSLSSS PDNGSSSLLS LDSVSSPTKA EKKEYPIDPS LPDIKSGVYS TDEFRMFSFK  240
IRPCSRAYSH DWTECPFAHP GENARRRDPR KSHYTCVPCP DFKKGSCKQG DACEYAHGVF  300
ECWLHPAQYR TRLCKDGTGC NRRVCFFAHL KEELRPVYAS TGSGLPSSPR GSMDMASVLN  360
MLPGSPSGGA PSSPSGNGVS SMCWPHQNVV PALHLPGSNV QLSRLRSSLN ARDMLQEFEM  420
SSSPRFMNHF SAAEVSSSSP RFSDQLAVSS VLSPSHKSAL LNQLQRDKQQ SMLSPIRTNL  480
MSSPNNVEQR AMEPISPMNA RMKQQQQLHH SRSLSSREFG SNLPRDMMMQ SDSGSPLSPW  540
SSWDQNHKVD WSVQSDELGR LRKSHSLANN KEADVTWVQQ MVKETASPRN MNGARPLVQG  600
GLSGDPHRDG RESDILDAWL DQLQLDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125867.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLM4E3M60.0M4E3M6_BRARP; Uncharacterized protein
STRINGBra023379.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain