PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009125507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 29090.6 Da PI: 7.3988 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF + L H +H XP_009125507.1 110 YQCKTCDKSFHSFQALGGHRASH 132 9*********9988888887776 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H XP_009125507.1 176 HECSICKAEFSSGQALGGHMRRH 198 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.6E-10 | 109 | 132 | No hit | No description |
Pfam | PF13912 | 5.8E-12 | 109 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.658 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.6E-10 | 171 | 198 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 173 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.3E-12 | 175 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 176 | 198 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.515 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MTSFHEETRL VLLTKGKRTK RPRSSSPHMN AEAVSGVCSE DRSLEAKEGA GEVEFQGATD 60 EDQDMANCLM LLSQGHKEKS SGDHSSTLKI GFLTDKKPVA SLGLGLDGVY QCKTCDKSFH 120 SFQALGGHRA SHKKPKRDEK NSASAVETVE SAEAVGSFLS LQVTSSDGSK KPEKTHECSI 180 CKAEFSSGQA LGGHMRRHRG LNVNANATSI TKAVLSSSHH QEPIRPKNFL ELDLNLPAPE 240 DEPKFVFASK DQMLLFVSAS NSLIDCHH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009125507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125507.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A398A8B6 | 0.0 | A0A398A8B6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EJ65 | 0.0 | M4EJ65_BRARP; Uncharacterized protein | ||||
STRING | Bra028831.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 1e-135 | C2H2 family protein |