PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009125049.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 706aa MW: 80030.1 Da PI: 6.6787

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009125049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.1	3.9e-111	331	701	1	371
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+avss+d ++a+ lL ++++++s++gd ++Rla+y++ L+arla++++++y al++++ts s+ l+a++++ v+P+ k + XP_009125049.1 331 LRTLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYLADSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYISVCPFKKTAI 422 6789************************************************************9999...9***************** PP GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + aN+ I+ + ++ +++HiiDf+is+G+QWp+L++ La R++g+ +lRiTg++ p+ g +e ++etgerLa+++++ +vpfe+n +a+++e XP_009125049.1 423 IFANHSIMHLAPTDaKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGfrPAEGVNETGERLARYCQRYNVPFEYNG-IAQKWE 516 *****99888799************************************99*************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++le+L++++gE +aVn+ ++ +llde+v+++s+rd+vLkl+k+++P+v++ + ++n++ F++rf e l +ys+lfd+ +++lpr + r XP_009125049.1 517 TIKLEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIKPNVFIPAVLSGSYNAPFFVTRFREVLFHYSSLFDMCDTSLPRGDPMR 611 ******************************************************************************************* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 ++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF++++l+++ +++ kl+++ + s+++ v+++ ++l++gWk+r +++ + XP_009125049.1 612 VMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYrSKEFDVDQDGNWLLQGWKGRIVYASC 701 ********************************************************99999******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.277	305	683	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-108	331	701	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042802	Molecular Function	identical protein binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MGSYSAGFPG SFDNFDFNYG DGFYLDDQAL LEIPSPFPPP PPAPPHPDPY SHAADAESDF 60 SDSVLKYISQ VLMEEDMEEK PCMFHDALSL QAAEKSLYEA LGQKYPDHPE RLAHSPDGSS 120 PGYASSTTSS DWSFDCLENS RRPSWLHSPI SNNFVFQSTR SNPKPSGGSN VALKSSFNND 180 LVSNMFNDSE LAFQFNRGKE EASKFLPKSS QLVIDVESYI PPNNDPKEHH SVLPYRSTGK 240 KKHWREDEHF LSEERSKKQS AVYVDEAELS EMFDKVLLFG RPKEQPLCIL NDNFIKETAK 300 DDSSSSYKSD TTQQKHAASG NSYKKETTPD LRTLLVSCAQ AVSSNDRKMA EDLLRQVRQH 360 SSSHGDGTER LAHYLADSLE ARLAGTGTQI YTALSSKKTS ASDMLKAYQT YISVCPFKKT 420 AIIFANHSIM HLAPTDAKTI HIIDFGISYG FQWPPLIHRL AWRRGGSCKL RITGIELPQR 480 GFRPAEGVNE TGERLARYCQ RYNVPFEYNG IAQKWETIKL EDLKLREGEF VAVNSLFRFR 540 NLLDETVAVH SPRDAVLKLI KKIKPNVFIP AVLSGSYNAP FFVTRFREVL FHYSSLFDMC 600 DTSLPRGDPM RVMFEKEFYG REIMNVVACE GSERVERPES YKQWQARAMR AGFRQLTLEK 660 ELVQKLKLMV ESGYRSKEFD VDQDGNWLLQ GWKGRIVYAS CTLVPM

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MGSYSAGFPG SFDNFDFNYG DGFYLDDQAL LEIPSPFPPP PPAPPHPDPY SHAADAESDF  60
SDSVLKYISQ VLMEEDMEEK PCMFHDALSL QAAEKSLYEA LGQKYPDHPE RLAHSPDGSS  120
PGYASSTTSS DWSFDCLENS RRPSWLHSPI SNNFVFQSTR SNPKPSGGSN VALKSSFNND  180
LVSNMFNDSE LAFQFNRGKE EASKFLPKSS QLVIDVESYI PPNNDPKEHH SVLPYRSTGK  240
KKHWREDEHF LSEERSKKQS AVYVDEAELS EMFDKVLLFG RPKEQPLCIL NDNFIKETAK  300
DDSSSSYKSD TTQQKHAASG NSYKKETTPD LRTLLVSCAQ AVSSNDRKMA EDLLRQVRQH  360
SSSHGDGTER LAHYLADSLE ARLAGTGTQI YTALSSKKTS ASDMLKAYQT YISVCPFKKT  420
AIIFANHSIM HLAPTDAKTI HIIDFGISYG FQWPPLIHRL AWRRGGSCKL RITGIELPQR  480
GFRPAEGVNE TGERLARYCQ RYNVPFEYNG IAQKWETIKL EDLKLREGEF VAVNSLFRFR  540
NLLDETVAVH SPRDAVLKLI KKIKPNVFIP AVLSGSYNAP FFVTRFREVL FHYSSLFDMC  600
DTSLPRGDPM RVMFEKEFYG REIMNVVACE GSERVERPES YKQWQARAMR AGFRQLTLEK  660
ELVQKLKLMV ESGYRSKEFD VDQDGNWLLQ GWKGRIVYAS CTLVPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-42	327	658	1	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009125049.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125049.1	0.0	PREDICTED: scarecrow-like protein 33 isoform X1
Swissprot	P0C883	0.0	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	M4EHX5	0.0	M4EHX5_BRARP; Uncharacterized protein
STRING	Bra028390.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein