PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125019.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31399.9 Da    PI: 6.0816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12.1e-2062115356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e++++LA+klgL+ rqV vWFqNrRa++k
  XP_009125019.1  62 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWK 115
                     56689************************************************9 PP
2HD-ZIP_I/II129.11.9e-4162153293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+++qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+e+++
  XP_009125019.1  62 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSEVTS 153
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-2047119IPR009057Homeodomain-like
PROSITE profilePS5007117.78357117IPR001356Homeobox domain
SMARTSM003897.0E-1960121IPR001356Homeobox domain
CDDcd000862.18E-1762118No hitNo description
PfamPF000461.1E-1762115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-2164124IPR009057Homeodomain-like
PRINTSPR000317.8E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000317.8E-697113IPR000047Helix-turn-helix motif
PfamPF021834.1E-15117159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESNSFFFDP SLSHGNMFFL NPAAVQAKSM MTTEESSKRR PFFCSHEDLY DDDYYDDHTP  60
DKKRRLTSQQ VHLLEKSFET ENKLEPERKT QLANKLGLQP RQVAVWFQNR RARWKTKQLE  120
RDFNLLKSSY DQLLSNYDSI LKDNHLLRSE VTSLVEKLQA KEDTTNKPPG QVPEANPQQQ  180
LHPVNMNQIE LPIKTEDRLS SGSTVLDEDD APQLLDSCNS YFPIIAPIHH SEGHNNRNGS  240
VNDRSCFVDV FVPTTSPPHG HGHGESLGFW GWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125019.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
SwissprotQ022831e-126HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLM4FHE10.0M4FHE1_BRARP; Uncharacterized protein
STRINGBra040519.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-129homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]