PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009125013.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 343aa MW: 38154.6 Da PI: 6.2399

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009125013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	20	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd e++ +yLk+kv + +++ +i ++d++k ePwdLp k+++ +e yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ XP_009125013.1 20 LPPGFRFHPTDAEIIIHYLKEKVFNVRFTS-AAIGQADLNKNEPWDLP-KIAKMGEEFYFFCQRDRKYPTGMRTNRATLSGYWKATGKDKEIFRG 112 79***********************999.78***********.5666689**********************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg vg+kktLvfy+grapkgekt+Wvmheyrl XP_009125013.1 113 KGCFVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 145 9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-57	17	171	IPR003441	NAC domain
PROSITE profile	PS51005	56.218	20	170	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLEEGGVVVN QGGDQEVVDL PPGFRFHPTD AEIIIHYLKE KVFNVRFTSA AIGQADLNKN 60 EPWDLPKIAK MGEEFYFFCQ RDRKYPTGMR TNRATLSGYW KATGKDKEIF RGKGCFVGMK 120 KTLVFYRGRA PKGEKTNWVM HEYRLDGIYS YHNLPKTARD EWVVCRVFHK NAPPPTTTAT 180 TTTTNQLTRI DSLDNIDHLL DFSSLPPLID PGFLSQPGPS FSGAGQQHDF KPIPHHPTTV 240 QINNTYPSAQ TLTYPYNSVP NYGFGSGYGT GSGNNNNGMI KLENSLVSVS QETGLSSDVN 300 TTATPEISSS YPGMVNTAAN AAMMDGNKTS YDDDDLGIFW DDY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLEEGGVVVN QGGDQEVVDL PPGFRFHPTD AEIIIHYLKE KVFNVRFTSA AIGQADLNKN  60
EPWDLPKIAK MGEEFYFFCQ RDRKYPTGMR TNRATLSGYW KATGKDKEIF RGKGCFVGMK  120
KTLVFYRGRA PKGEKTNWVM HEYRLDGIYS YHNLPKTARD EWVVCRVFHK NAPPPTTTAT  180
TTTTNQLTRI DSLDNIDHLL DFSSLPPLID PGFLSQPGPS FSGAGQQHDF KPIPHHPTTV  240
QINNTYPSAQ TLTYPYNSVP NYGFGSGYGT GSGNNNNGMI KLENSLVSVS QETGLSSDVN  300
TTATPEISSS YPGMVNTAAN AAMMDGNKTS YDDDDLGIFW DDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	18	172	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	18	172	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	18	172	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	18	172	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	18	172	18	170	NAC domain-containing protein 19
3swm_B	1e-47	18	172	18	170	NAC domain-containing protein 19
3swm_C	1e-47	18	172	18	170	NAC domain-containing protein 19
3swm_D	1e-47	18	172	18	170	NAC domain-containing protein 19
3swp_A	1e-47	18	172	18	170	NAC domain-containing protein 19
3swp_B	1e-47	18	172	18	170	NAC domain-containing protein 19
3swp_C	1e-47	18	172	18	170	NAC domain-containing protein 19
3swp_D	1e-47	18	172	18	170	NAC domain-containing protein 19
4dul_A	1e-47	18	172	15	167	NAC domain-containing protein 19
4dul_B	1e-47	18	172	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009125013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125013.1	0.0	PREDICTED: NAC domain-containing protein 79-like isoform X2
Swissprot	Q9SQQ6	0.0	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	M4FGC5	0.0	M4FGC5_BRARP; Uncharacterized protein
STRING	Bra040153.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	0.0	NAC domain containing protein 46

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]