PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124958.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 413aa    MW: 46758.4 Da    PI: 6.2847
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.5e-121152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i+n s r+ t+  R++g+lKK  E+ +LCd++++ +i+s+ +
  XP_009124958.1 11 ISNVSARKRTLNLRKKGLLKKLDEIKTLCDVDACAVIYSPYN 52
                    99*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.862149IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-19295IPR002100Transcription factor, MADS-box
PfamPF003191.9E-111152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTRKKTNLAY ISNVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNSTPEVWPS  60
NSEVQKVMEK FENLPEEKQT KKSFNHEEFL NQTITKVQNQ VKKLIEGNND KLMEELMFSC  120
LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVILKNT HLETGESSSM AMAMGMPPVA  180
MAEAGSSFFN SPQQTNESQP LVTSNQGQEH ISSHGNQFLN VPTNFPQQPN EVQCAVSSNQ  240
GLEHVPSLKN NFMCAPIFNS PLLTNESQPL VTSNHGPEHI CSHGSQFPNV PTFNFSQQTN  300
ELRHTISPNQ GLEHVHSLGN NFMNAPTFNS PQLTNEMQQP IIFSNQGANH VDSLASNLLP  360
VSNHGVNTQV MNQDEVYYPL NQQDWYVKEM MEQSEPTCFP WMEENHHYNH RQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124958.10.0PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A398AZQ60.0A0A398AZQ6_BRACM; Uncharacterized protein
TrEMBLM4FGM00.0M4FGM0_BRARP; Uncharacterized protein
STRINGBra040248.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-58AGAMOUS-like 46