PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009124920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 435aa MW: 46405.1 Da PI: 8.13 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.2e-12 | 47 | 71 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C yG+rC+F+H++ XP_009124920.1 47 EPDCIYYLRTGVCGYGSRCRFNHPR 71 799********************96 PP | |||||||
2 | zf-CCCH | 36.4 | 8.6e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtC++G++Ck++H++ XP_009124920.1 90 HPVCQHFMRTGTCQFGASCKYHHPR 114 789********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 136 | 159 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG+Ck+G +C+F+H+ XP_009124920.1 136 EKECSYYMRTGQCKFGLTCRFNHP 159 689********************9 PP | |||||||
4 | zf-CCCH | 39.8 | 7.7e-13 | 289 | 314 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f+rtG Ck+G++C+++H+p XP_009124920.1 289 DQPECQYFMRTGDCKFGSSCRYHHPP 314 689*********************97 PP | |||||||
5 | zf-CCCH | 33.2 | 8.7e-11 | 337 | 362 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +fa+ G+Ck+G+ CkF+H++ XP_009124920.1 337 GVAQCTHFAQHGICKFGPACKFNHSM 362 6788********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.742 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 89 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 92 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-10 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 139 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 287 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 289 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 290 | 314 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 293 | 312 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 337 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 338 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 341 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDRYGRAGEE GSRSDPSIQW TSHGVETSMG RLALGGGGES YPERSDEPDC IYYLRTGVCG 60 YGSRCRFNHP RNRGAVIGGG DGVLPERMGH PVCQHFMRTG TCQFGASCKY HHPRQGGGSV 120 APVSLSYLGY PLRLGEKECS YYMRTGQCKF GLTCRFNHPV PLQPQQQQPQ PQLQTIYPTL 180 QSQPMPSSQQ YGLVLSRPSL LPASYLPSPY GGPPPMVMPP GMVTYPSWNP YQASLTAMPS 240 PGTQPSIGSS SVYGMASLSP SGPAYTGTYQ SGGPSLTAST EQSFPQRPDQ PECQYFMRTG 300 DCKFGSSCRY HHPPLDALLQ PKTGVLLNSI GLPLRPGVAQ CTHFAQHGIC KFGPACKFNH 360 SMSSSLSYSP SASSLTNMHV APYPIGSSAP ISSSNEPTTE AVTAVVSSPM VSGLSQQEAA 420 GTSCDSAIEA KASSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.26077 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009124920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510109.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1 | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | M4FGJ2 | 0.0 | M4FGJ2_BRARP; Uncharacterized protein | ||||
STRING | Bra040220.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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