PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124629.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 419aa    MW: 46353.9 Da    PI: 4.8046
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.28e-36228324297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     +fqr+w+eeDeiv+LqG+id++ +tg++p+dd +a+ye +k+s+sf+ +k q++eKir LKkKf  +  k +k+g+e +fsk+hd ++f lsk +
  XP_009124629.1 228 YFQRVWTEEDEIVILQGIIDYRFETGSNPFDDKNALYELLKESVSFNPTKIQFLEKIRGLKKKFDSNLGKeKKKGEELAFSKSHDLEAFRLSKFV 322
                     8******************************************************************9997899********************* PP

          DUF573  96 Wg 97 
                     Wg
  XP_009124629.1 323 WG 324
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-29229324IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MKPNKTHSQV TPLKNRKKKT KEKVMTVEHL QDQQNASSSD EDSVDNSLSA EEEETDSETE  60
PVVDSKKGET SKTRANSSSP VTKPPPADSN KVETSKKRSS ETGEGEEAKR VKRVSLSGDG  120
DNKKSTSSSE GETDSESETE SVADSKIVET SSKPKTTANS LSEVATVSSS YEDSSSSSGD  180
EETDPPVPNP VVEPPAESSR KVVEASSKKQ PSIETDEGEA KRDTKKNYFQ RVWTEEDEIV  240
ILQGIIDYRF ETGSNPFDDK NALYELLKES VSFNPTKIQF LEKIRGLKKK FDSNLGKEKK  300
KGEELAFSKS HDLEAFRLSK FVWGDHDGIT ANAIGVEPAV LKLDEPKQGS VSLVESVTRF  360
GMDDLVAKKG WSRLSSEDKK SLEEEWEALA LEEFKFYSRK SRIIHDAIAK MAEASQPDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124629.10.0PREDICTED: probable transcription factor At1g11510
TrEMBLM4FBW70.0M4FBW7_BRARP; Uncharacterized protein
STRINGBra038583.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3065622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-30DNA-binding storekeeper protein-related transcriptional regulator