PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124618.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25782.8 Da    PI: 6.0644
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.6e-2063116457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F  ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k+
  XP_009124618.1  63 KRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKN 116
                     45899***********************************************95 PP
2HD-ZIP_I/II123.11.3e-3962153293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L+e+l++
  XP_009124618.1  62 RKRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKNKRLEDEYTRLKNAHENVVVEKCRLDSEVLHLKEQLHD 153
                     8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8657117IPR001356Homeobox domain
SuperFamilySSF466894.6E-1860124IPR009057Homeodomain-like
SMARTSM003891.3E-1960121IPR001356Homeobox domain
CDDcd000862.46E-1762118No hitNo description
PfamPF000463.1E-1763116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2064123IPR009057Homeodomain-like
PRINTSPR000311.2E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000311.2E-597113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNNQNVDDHN LLFISQMYPS VYTASIPQQA GESKPARPRR RRKSKSVAVA EVGGEGGNGW  60
FRKRKLSDEQ VRMLEMSFGD EHKLESERKD RLAKELGLDP RQVAVWFQNR RARWKNKRLE  120
DEYTRLKNAH ENVVVEKCRL DSEVLHLKEQ LHDAEREIQR LALRVEGVLS NSPISSSVSV  180
EANQTTPFFG DYEVEVGDDG GGYENLFYSP EYIDGFEWMS PFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RRRKSK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124618.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124618.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X1
SwissprotQ9ZU701e-129ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3P5YE961e-165A0A3P5YE96_BRACM; Uncharacterized protein
STRINGBra040941.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-98homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]