PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009124187.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 303aa MW: 33522 Da PI: 9.7291

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009124187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6.2e-31	236	293	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ XP_009124187.1 236 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 293 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.5E-16	199	232	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.5E-33	222	293	IPR003657	WRKY domain
PROSITE profile	PS50811	29.471	229	295	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	232	293	IPR003657	WRKY domain
SMART	SM00774	5.5E-37	234	294	IPR003657	WRKY domain
Pfam	PF03106	1.6E-26	236	292	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEEVEAASKL AIESCHGVLT LLSQQQTSCD SKSLMVETRE VVSKLKRVAS LLTKGSGHGK 60 FRRTNNNKFS PSFPQHIFLE SPICCGNDES SDYTQVLAPE PLQMVPASDE IDPRYQLGHP 120 LSHRWPPPFR APYQKIAYSR SNSGGVNLTF DGSASSCYTP SVSNGSRSFV SSLSMDTSVD 180 RSSFQLTGLS RGKMCSGSLK CGSRSKCHCS KKRKLRVKRS IKVPAISNKI ADIPPDEYSW 240 RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH NHSRILSSQS 300 AHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	227	292	7	71	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18209	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009124187.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ210290	0.0	FJ210290.1 Brassica napus cultivar Westar WRKY transcription factor 39 (WRKY39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124187.1	0.0	PREDICTED: probable WRKY transcription factor 39
Refseq	XP_013750776.1	0.0	probable WRKY transcription factor 39
Refseq	XP_013750780.1	0.0	probable WRKY transcription factor 39
Swissprot	Q9SR07	1e-179	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	M4FH18	0.0	M4FH18_BRARP; Uncharacterized protein
STRING	Bra040396.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-154	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]