PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009123992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 39170.7 Da PI: 5.5009 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 155 | 209 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ XP_009123992.1 155 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 209 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.862 | 152 | 212 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.81E-17 | 153 | 209 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-30 | 154 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 155 | 209 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-10 | 157 | 208 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-22 | 243 | 289 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MNNPVPCQVF PLASGGTSSG YCNGTYVSAQ ERSSSQTRQS VETQSLPVTN QPQEQRDMSW 60 PEDQLQGFFD FPPQGESSSR AKSEWPDWAN QMISVDDGLE PNWSELLGDP NVLNQDSKIP 120 TPSCDIARQE IVVSTQHQVD SSSAKSPQAS SMTSKQRMRW TPELHEAFVD AINQLGGSER 180 ATPKAVLKLI NSPGLTIYHV KSHLQKYRTA RYKPEISIDT EKPPLKTLKT IEDIKSLDLK 240 TSIEITEALR LQMEVQKKLH EQLEVQRTLQ LQIEEQGRYL QMMIEKQQQK MQEKKIGSSS 300 GTSSMPEADT SSAPSPNLSQ ASVTERLQSG GSSTLDQSGY PSGATKKRVR ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-27 | 155 | 213 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009123992.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123992.1 | 0.0 | PREDICTED: myb family transcription factor PHL13 isoform X2 | ||||
Refseq | XP_009123993.1 | 0.0 | PREDICTED: myb family transcription factor PHL13 isoform X2 | ||||
Refseq | XP_009123994.1 | 0.0 | PREDICTED: myb family transcription factor PHL13 isoform X2 | ||||
Swissprot | F4J3P7 | 1e-171 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | M4FGG8 | 0.0 | M4FGG8_BRARP; Uncharacterized protein | ||||
STRING | Bra040196.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 1e-154 | G2-like family protein |
Publications ? help Back to Top | |||
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