PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009123944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 309aa MW: 34950.7 Da PI: 7.9493 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.6e-07 | 91 | 113 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg XP_009123944.1 91 YPICS-FAAAGDCPRGSQCPHMHG 113 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.62 | 28 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 29 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.211 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.7E-10 | 138 | 216 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.53E-12 | 145 | 221 | No hit | No description |
CDD | cd00162 | 0.00266 | 156 | 216 | No hit | No description |
Pfam | PF00097 | 6.9E-8 | 157 | 214 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.386 | 157 | 215 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 8.7E-8 | 157 | 214 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 181 | 190 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.75 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 244 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MSDRILCKFF IHGSCLKGEH CEYSHDSNVC TFYQKGICLY GSRCRNEHVR TTSQPQSLSP 60 SNVPPPPQKG DDNNNNNNNN NDVCYIHPRE YPICSFAAAG DCPRGSQCPH MHGDICSTCG 120 KKCLHPFRPE EREEHTKECQ KKQKHIEALK KSQEIECSVC LDRVLSKATP GERKFGLLTE 180 CHHPFCIQCI RNWRSSAPVS GMDVNSTLRA CPICRKLSYF VVPSVVWYST PDEKKEIIDI 240 YKAKLRSINC KHFNFGNGNC PFGGSCFYKH AYSDGHLDEV VVRNLGSQEG ETLIADSIRL 300 SEFLGRVHI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009123944.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123944.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin-like | ||||
Swissprot | Q6IDS6 | 0.0 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | M4FG23 | 0.0 | M4FG23_BRARP; Uncharacterized protein | ||||
STRING | Bra040048.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-171 | C3H family protein |