PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123630.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 334aa    MW: 36921.6 Da    PI: 6.9133
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.8e-151050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+  r+ t+ kR++g+lKK +ELS+LC++ +  ii+s+
  XP_009123630.1 10 FILNNASRKATYKKRKKGLLKKVHELSTLCGIAAGAIIYSP 50
                    788999*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.708149IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-22160IPR002100Transcription factor, MADS-box
CDDcd002661.25E-16285No hitNo description
SuperFamilySSF554555.23E-22295IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTRRKVKLAF ILNNASRKAT YKKRKKGLLK KVHELSTLCG IAAGAIIYSP YDPTPEVWPD  60
ADGIQQVIAA FRSLPELDQH KNMVNQEEYV KQRIEKAGKL LKKQTRDNRE AHFTEVMYQC  120
LMGNMGVAGA RAMDLNDLGF LIDQYLHCLD RRIETLLGSS NMEIGESSNA VAAAMDQDPS  180
EPAGTLPLLE GATAPAAAVH EVGSSSSSAA AAGASFNQMY PFPQNQQMFY QPSAPFAGYY  240
EQSHNHNQFM EMMNHPEHMA YAANQMGFPY TDNAHHYRQP NQPQPQQFFP GESSAAPQRQ  300
FFPGESSAAP PPPGTSGSEP PATAPFPPNN IWFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFILNNASRKATYKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084925e-42AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123630.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-86AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM4FIU30.0M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-78AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]