PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123529.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 372aa    MW: 40021.1 Da    PI: 9.987
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.48.6e-15295350560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ +  ++ ++ ++ +
  XP_009123529.1 295 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENQELQRKQAKIMEMQKNQE 350
                     79***************************************999888888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-13291355IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174293344IPR004827Basic-leucine zipper domain
PfamPF001701.2E-12295351IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-14295344No hitNo description
CDDcd147071.62E-27295349No hitNo description
SuperFamilySSF579598.13E-11295344No hitNo description
PROSITE patternPS000360298313IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNFKNNNNMG NEPPGDGGGG ALTRQGSIYS LTFDEFQSSL GKDFGSMNMD ELLKNIWTAE  60
ETQAMAVAAS TSGVIPLAGE GLPLQRQGSL TLPRTLSTKT VDQVWKDLAK DGGGGTNLTQ  120
SQSQRQQTLG EVTLEEFLVR AGVVREEAQI AAKDANTGFS VQASPQVVPG LMGNLGAETV  180
NHMQVQGSSL PLNVNGARST YQQHQPIMPK QPGFGYGTHV GPGIRGGLMG LGDQSLTNNM  240
GLVQGVVGAV SPVTPVSADG IGKNNGDSSS LSPSPYMFNG VRGRKSGTVE KVVERRQRRM  300
IKNRESAARS RARKQAYTVE LEAEVAKLKE ENQELQRKQA KIMEMQKNQE MEMMNIQGGA  360
KKKLRRTESG PW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123529.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6165270.0HE616527.1 Brassica napus mRNA for abscisic acid responsive elements-binding factor 2 (abf2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123528.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
SwissprotQ9M7Q40.0AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A397XIM40.0A0A397XIM4_BRACM; Uncharacterized protein
STRINGBra040260.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-152abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]