PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 537aa MW: 60806 Da PI: 4.2161 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.7e-51 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +++yk+ePwdLp + k+k+++ ewyfFs d+ky++g+++nrat+ gyWk+tgkd+e+ XP_009122853.1 13 LAPGFRFHPTDEELVRYYLKRKICDKPFKF-DAISVTHVYKSEPWDLPsQsKLKSRDLEWYFFSVLDNKYSNGSKTNRATEMGYWKTTGKDREIR 106 579**************************9.99**************95247777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+++Wvmheyrl XP_009122853.1 107 N-GSRVVGMKKTLVYHKGRAPRGERSNWVMHEYRL 140 9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-60 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.38 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-27 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009819 | Biological Process | drought recovery | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MGRRGISSET SSLAPGFRFH PTDEELVRYY LKRKICDKPF KFDAISVTHV YKSEPWDLPS 60 QSKLKSRDLE WYFFSVLDNK YSNGSKTNRA TEMGYWKTTG KDREIRNGSR VVGMKKTLVY 120 HKGRAPRGER SNWVMHEYRL VDDDIVKAGV QKDAYVLCKI FQKSGSGPKN GEQYGAPFVE 180 EEWEEEDCMT FEPNQDPGSL EDQAYVDIHD IDQKLDVYDA IPIHLGFDQG ESSNNVETNY 240 SDTTNYIQPG NYVHDNFEGP VDLSEEEQKL IIRDALFPDE ENGCGVKDES TANLQSCDNI 300 FDADTSLYND FPIEGNYFTG EEFLDPNDGL YLETNDLNST EQDGFNFEDY LTFFDEDDQN 360 LTFDPSQLMG TEDVVPDQEE LFQMAEAKEV EKEEASGGKQ VVEEKENDEA CCSKQVNADT 420 TEFEPDNKNS VLKKASHMFG AIPTPTEFAS EILTKDGVVR LQAGQSSGSV HVSMITVSDS 480 NMGWSYSKNG DLSFGMVQEN VPGKSENNLT RMMLIFVCFW VLVLSVSFKV STLVSSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-43 | 12 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-43 | 12 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-43 | 12 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-43 | 12 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-43 | 12 | 169 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-43 | 12 | 169 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-43 | 12 | 169 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.18220 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the anthers and the upper parts of the stamen filaments after stage 7 to 9 of flower budding. In stage 10 flower buds, expressed in the anthers and pollen grains. Weakly expressed in mature flowers at stage 12. {ECO:0000269|PubMed:24323506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex and stems. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00343 | DAP | Transfer from AT3G10500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122853.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122853.1 | 0.0 | PREDICTED: NAC domain-containing protein 53 | ||||
Swissprot | Q949N0 | 0.0 | NAC53_ARATH; NAC domain-containing protein 53 | ||||
TrEMBL | M4EZ77 | 0.0 | M4EZ77_BRARP; Uncharacterized protein | ||||
STRING | Bra034120.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 0.0 | NAC domain containing protein 53 |
Publications ? help Back to Top | |||
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