PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 554aa MW: 62016.8 Da PI: 4.1876 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.3e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k ++k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ XP_009122601.1 9 LAPGFRFHPTDEELVRYYLKRKVCNKPFTF-DAISVTDIYKSEPWDLPdKsMLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 102 579************************999.99**************96446666777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl XP_009122601.1 103 N-GSRAVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136 9.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.982 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MGLGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFTFDA ISVTDIYKSE PWDLPDKSML 60 KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE IRNGSRAVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLTDEE LKRAGAPLDA FVLCRIFQKS GTGPKNGEQY GAPYLEEEWE 180 EDKMTFVPEQ DALSEGLAVD DDVYVDIDEI DEKPENLVVY DAIPVQTNYC HGESSNNAES 240 GNYEDSGNYV VDSGGYIEQP TETFEEDQKP IIRDCSIQPC SLYPVEQIGC GVEDENAVNL 300 ETSNNNVFVA DPCYSDIPIE ADYLPDEPFM DPSNNLPLCD DLYLETNDLS GGGLQDDFNF 360 EDYLNFFDDE EAQNLTLDVS QLLGSQDAPP EQEGLDQKPS PEELEKEVVE KKESGEGSSS 420 KQDADVTDFD SDSKYPFLKK SSHMFGVPPS FASQFQTKDA AIRLHAAQSS GSVHVTAGMI 480 RISNMTPAVD SDMGWAYDKS GDLNVVLSFG LVQRDDAMSK TGGTSATRAM LIFLCLWVLL 540 LSVSFKIVTM VSAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.21245 | 0.0 | bud| leaf| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122601.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641356 | 0.0 | KP641356.1 Brassica napus NAC transcription factor 78.1 (NAC78.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122601.1 | 0.0 | PREDICTED: NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | M4CZ09 | 0.0 | M4CZ09_BRARP; Uncharacterized protein | ||||
STRING | Bra009456.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |