PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121993.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 477aa MW: 53484.1 Da PI: 8.2141

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+ XP_009121993.1 14 KKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKR 69 899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-19	4	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	10	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-17	12	77	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-19	12	74	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	14	69	IPR001356	Homeobox domain
CDD	cd00086	1.48E-17	14	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF 60 CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKPREVESQR 120 LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQTMRSHGLS KPSGYLKVKG 180 DSENVAITAV KRQLGRQYRE DGPPLGVEFD PLPPGAFEPQ TNSVVVQEPI YVGNQRRSHT 240 PYFTGTRKSF VPGPSYEPAR KPKMLLSDPY SSSEDEDDDD DDMMGGMEPG LGDKQTLREP 300 SFKSPSLSYS NTVPDRKGPP QGVPLTNSKK SHISSKGRAE GSRYNLIDNF HNLSGTSQTH 360 DYDKSILNGG RKTGYLTKSS NMLPLSGSRS SDSMERDTSS GMVGKYHGEK MNHMKMHREK 420 LHSTGEPLVT KRLKHGYPQQ VYSETFERKD QINRSGVELP SSFNGDETEE SSSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF  60
CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKPREVESQR  120
LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQTMRSHGLS KPSGYLKVKG  180
DSENVAITAV KRQLGRQYRE DGPPLGVEFD PLPPGAFEPQ TNSVVVQEPI YVGNQRRSHT  240
PYFTGTRKSF VPGPSYEPAR KPKMLLSDPY SSSEDEDDDD DDMMGGMEPG LGDKQTLREP  300
SFKSPSLSYS NTVPDRKGPP QGVPLTNSKK SHISSKGRAE GSRYNLIDNF HNLSGTSQTH  360
DYDKSILNGG RKTGYLTKSS NMLPLSGSRS SDSMERDTSS GMVGKYHGEK MNHMKMHREK  420
LHSTGEPLVT KRLKHGYPQQ VYSETFERKD QINRSGVELP SSFNGDETEE SSSSSMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121993.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121993.1	0.0	PREDICTED: uncharacterized protein LOC103846745 isoform X2
TrEMBL	M4EZF3	0.0	M4EZF3_BRARP; Uncharacterized protein
STRING	Bra034196.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein