PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 647aa MW: 71046 Da PI: 7.7332 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 265 | 285 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G Ck Gd C +aHg XP_009121832.1 265 PCPDFKK-GSCKQGDACEYAHG 285 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 8.24E-16 | 11 | 145 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.6E-18 | 15 | 160 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 7.7E-10 | 55 | 128 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.202 | 59 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.16 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.93E-13 | 61 | 143 | No hit | No description |
SMART | SM00248 | 9.8E-5 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.835 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.5E-4 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 265 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 293 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 58 | 295 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MCGLSKNDSE LEHSFSALLE FAADNNVEGF KQQLSLVPCI NQMGLWYRRQ RFVRRMVVEQ 60 RTPLMVASIY GSVDVVKLIL SFPEAELNLA SGSDKSTALH CAASGASVNS LGVVKLLLSA 120 GADPNIHDAH GNRAVDVLVA SPHAPGLRTV LEEILKKDED PSSSLGSSLR SLSSSPENGS 180 SLLSLGSVSS PTKVDASEKK EYPLDPSLPD IKSGIYSTDE FRMFSFKIRP CSRAYSHDWT 240 ECPFAHPGEN ARRRDPRKFH YTCVPCPDFK KGSCKQGDAC EYAHGVFECW LHPAQYRTRL 300 CKDGTSCNRR VCFFAHLKEE LRPLYASTGS GLPSPSSAAS TMDMASVLNM LPGSPSAAPI 360 SPSASMGWPQ QNNIPALHLP GSNVQLSRLR SSLNARDIIP SEQLSMMQEF EMQCMSSPRF 420 MNHHHSARPK TLLTPSNLEE LFSAEVASSP RFSDQLGVSS VLSPSHKSAL LNQLQSNKQQ 480 SMLSPIKTNL MSSPKNVEHH SPRAMEPISP MNSRMKQQLH PRSLSSRDFG SSLPRDMMPT 540 DSGSPLSPWS SWDQNHGNKV DWSVQSDELG RLRKSHSLAN NNNSNREADV TWVQQLVKDS 600 AASPRNNNGA MNMNGSRPLV QGGSSVNPPH SESDILDAWL EQLQLDR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31306 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121831.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_009121832.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_018511118.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A3P6D9R2 | 0.0 | A0A3P6D9R2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CXD0 | 0.0 | M4CXD0_BRARP; Uncharacterized protein | ||||
STRING | Bra008877.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |