PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121831.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 647aa    MW: 71046 Da    PI: 7.7332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07265285526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + G Ck Gd C +aHg
  XP_009121831.1 265 PCPDFKK-GSCKQGDACEYAHG 285
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.24E-1611145IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-1815160IPR020683Ankyrin repeat-containing domain
PfamPF127967.7E-1055128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.20259166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165989IPR002110Ankyrin repeat
CDDcd002041.93E-1361143No hitNo description
SMARTSM002489.8E-594126IPR002110Ankyrin repeat
PROSITE profilePS5008811.83594129IPR002110Ankyrin repeat
SMARTSM003561.5E-4260286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4265287IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5265285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028265287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4293323IPR000571Zinc finger, CCCH-type
SMARTSM0035658295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MCGLSKNDSE LEHSFSALLE FAADNNVEGF KQQLSLVPCI NQMGLWYRRQ RFVRRMVVEQ  60
RTPLMVASIY GSVDVVKLIL SFPEAELNLA SGSDKSTALH CAASGASVNS LGVVKLLLSA  120
GADPNIHDAH GNRAVDVLVA SPHAPGLRTV LEEILKKDED PSSSLGSSLR SLSSSPENGS  180
SLLSLGSVSS PTKVDASEKK EYPLDPSLPD IKSGIYSTDE FRMFSFKIRP CSRAYSHDWT  240
ECPFAHPGEN ARRRDPRKFH YTCVPCPDFK KGSCKQGDAC EYAHGVFECW LHPAQYRTRL  300
CKDGTSCNRR VCFFAHLKEE LRPLYASTGS GLPSPSSAAS TMDMASVLNM LPGSPSAAPI  360
SPSASMGWPQ QNNIPALHLP GSNVQLSRLR SSLNARDIIP SEQLSMMQEF EMQCMSSPRF  420
MNHHHSARPK TLLTPSNLEE LFSAEVASSP RFSDQLGVSS VLSPSHKSAL LNQLQSNKQQ  480
SMLSPIKTNL MSSPKNVEHH SPRAMEPISP MNSRMKQQLH PRSLSSRDFG SSLPRDMMPT  540
DSGSPLSPWS SWDQNHGNKV DWSVQSDELG RLRKSHSLAN NNNSNREADV TWVQQLVKDS  600
AASPRNNNGA MNMNGSRPLV QGGSSVNPPH SESDILDAWL EQLQLDR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.313060.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121831.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
RefseqXP_009121832.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
RefseqXP_018511118.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3P6D9R20.0A0A3P6D9R2_BRACM; Uncharacterized protein
TrEMBLM4CXD00.0M4CXD0_BRARP; Uncharacterized protein
STRINGBra008877.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain