PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121398.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 374aa MW: 41369.3 Da PI: 8.9249

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	41	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++v+a k++G W++I +++g ++t+ q++s+ qk+ XP_009121398.1 41 RERWTDEEHNKFVEALKLHGRA-WRKIEEHLG-TKTAVQIRSHAQKF 85 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-16	35	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.114	36	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-9	38	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-15	39	88	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-13	40	88	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-14	41	84	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-10	43	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MASSPLTTNV QGAKTKIQLS DQEGNDYAPK VRKPYTITKE RERWTDEEHN KFVEALKLHG 60 RAWRKIEEHL GTKTAVQIRS HAQKFFSKVA KEASGGNGSS LEPILIPPPR PKRKPMHPYP 120 RKLGNEGDQA SRSVSPSERD NGSPTSVLST VGSEALGSSD SHSPNRSLSP VSSASPPAAP 180 LATTENAPEE LETSATKLEL FPRESLVKEP KKQSLRLFGN TVLVSDSGVS SSLTTYCKSP 240 IIQPLPRKLS RSETFPMVIN PQEKLLSCWI QQVPPKQEEV ENRCSDSEKA VQNEGSSTGS 300 NTGSVDDTGH TDKSSEPPET MVCRWEFKAS ERSAFSELRR KNSESNSRGF GPYKKRKMVI 360 EAEQEEQEQI RLCL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MASSPLTTNV QGAKTKIQLS DQEGNDYAPK VRKPYTITKE RERWTDEEHN KFVEALKLHG  60
RAWRKIEEHL GTKTAVQIRS HAQKFFSKVA KEASGGNGSS LEPILIPPPR PKRKPMHPYP  120
RKLGNEGDQA SRSVSPSERD NGSPTSVLST VGSEALGSSD SHSPNRSLSP VSSASPPAAP  180
LATTENAPEE LETSATKLEL FPRESLVKEP KKQSLRLFGN TVLVSDSGVS SSLTTYCKSP  240
IIQPLPRKLS RSETFPMVIN PQEKLLSCWI QQVPPKQEEV ENRCSDSEKA VQNEGSSTGS  300
NTGSVDDTGH TDKSSEPPET MVCRWEFKAS ERSAFSELRR KNSESNSRGF GPYKKRKMVI  360
EAEQEEQEQI RLCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	356	RRKNSESNSRGFGPYKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31728	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121398.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353109	1e-180	AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121398.1	0.0	PREDICTED: protein REVEILLE 1-like
Swissprot	F4KGY6	0.0	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A3P6CKC0	0.0	A0A3P6CKC0_BRACM; Uncharacterized protein
STRING	Bra008563.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-142	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]