PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121166.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 319aa MW: 36633.3 Da PI: 9.6789

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.9	4.4e-45	41	168	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+++yLk+ v gk++++ evi ++iy ++PwdLp+ + +e+ewyf ++r++k+ g r++r+t++gyWkatg+d++++s+ XP_009121166.1 41 LPGFRFHPTEEELLDFYLKNTVYGKRCKV-EVIGFLNIYGHDPWDLPRLSTIGEREWYFLVPRERKHGDGGRPSRITEKGYWKATGSDRKIISSs 134 59*************************.99***********7777799**********************************986 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+grap g+ktdWvm+e+r+ XP_009121166.1 135 ePKRMIGLKKTLVFYTGRAPGGTKTDWVMNEFRM 168 66677*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-53	40	186	IPR003441	NAC domain
PROSITE profile	PS51005	51.032	40	186	IPR003441	NAC domain
Pfam	PF02365	4.5E-23	42	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MALHLSFDLV CSLKTLPHHT THWVQVLYIG TVRDMSKEIQ LPGFRFHPTE EELLDFYLKN 60 TVYGKRCKVE VIGFLNIYGH DPWDLPRLST IGEREWYFLV PRERKHGDGG RPSRITEKGY 120 WKATGSDRKI ISSSEPKRMI GLKKTLVFYT GRAPGGTKTD WVMNEFRMPD NLTLPKSVVL 180 CKIYRKATSL KVLEQRAEME AKMNQTRPSS PLSSSDTNCL AGKEEDVMMT SFPFPQAEAM 240 KQPNHILMLQ GHNENAKNKE KQRETERKQP SSSLKLPSGV LPIPELQLPK QGFELGQDQF 300 LSISPWLQNL TPIINLLYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-44	33	186	7	168	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.10300	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121166.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738270	0.0	KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121166.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	4e-84	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M4CCT7	0.0	M4CCT7_BRARP; Uncharacterized protein
STRING	Bra002018.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-158	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]