PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120686.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 249aa    MW: 28437.3 Da    PI: 6.4139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.9e-141093295
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    fk l     + sg + +p +f ++h  g +   +k  +l++  s + Wev    +++    +ltkGWkeF +a++L+ gD+v+Fk++g++ f  +v+
  XP_009120686.1 10 FKPL--LPGFHSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HVT 93
                    5666..4555555.99*********86433..4445666654999****988..555....4***********************9999988..766 PP
2B365.67.4e-21130223498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++ + k + + lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ ++++++ v+ 
  XP_009120686.1 130 AEVTPTNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 223
                     5678999999*********9.7755556779*****************************************************9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-193100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-194104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561698IPR003340B3 DNA binding domain
CDDcd100171.88E-14795No hitNo description
SMARTSM010199.0E-20998IPR003340B3 DNA binding domain
PfamPF023626.7E-91890IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-17126219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.366127225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16127219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-14127215No hitNo description
SMARTSM010193.2E-17128225IPR003340B3 DNA binding domain
PfamPF023629.3E-19130223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT  60
LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTHPHIV KEEADADDAP  120
TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES  180
DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID  240
GSIASTSRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553380.0AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
GenBankAP0116220.0AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120686.10.0PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM4DWI00.0M4DWI0_BRARP; Uncharacterized protein
TrEMBLM4F1550.0M4F155_BRARP; Uncharacterized protein
STRINGBra020874.1-P0.0(Brassica rapa)
STRINGBra034801.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-59B3 family protein