PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009120669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37961.4 Da PI: 5.9535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.8 | 1.8e-48 | 17 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++r+tk gyWk tgk+++v+s XP_009120669.1 17 FPGFKFSPTDVELISYYLKRKMDGLEKSV-EVIPETDIYSFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRTTKMGYWKVTGKERDVKS- 109 69************************999.99***************778888999**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf+ grapkg++t+W+mhey + XP_009120669.1 110 SSQVIGTKRTLVFHIGRAPKGQRTEWLMHEYCM 142 999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-53 | 15 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.78 | 16 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-24 | 18 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
METAAVGVSK DMASTVFPGF KFSPTDVELI SYYLKRKMDG LEKSVEVIPE TDIYSFEPWD 60 LPDKSIVKSD TEWFFFCARG KKYPHGSQNR RTTKMGYWKV TGKERDVKSS SQVIGTKRTL 120 VFHIGRAPKG QRTEWLMHEY CMKGGVYMVH YSEDDALVVC RLRRNREFRT CTSQKAPLEP 180 HLAADKHMIL QNGAASSGSP VDFYLAGESG DNHLTETPEN LQVETEEDFY GDILRDEIIN 240 LDEVVMSGKT PNEVPTLESV SMEIRILPLP NMIDGQMASI LDERPSQEKK GKGISGTEPL 300 SSCFMGVYSI KWVNRVRRDV IIAVVGLIVM LFYQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-40 | 18 | 166 | 22 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31468 | 1e-155 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009120669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974764 | 1e-154 | KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120669.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like | ||||
Swissprot | Q94F58 | 0.0 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | M4CDX2 | 0.0 | M4CDX2_BRARP; Uncharacterized protein | ||||
STRING | Bra002403.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 0.0 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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