PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120648.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 288aa    MW: 33024.3 Da    PI: 5.8598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.9e-20106165359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg+ WrKYGqK++k+s++ rsYYrC+++   +C ++k+ ++ +e+p v  +tY g+H ++
  XP_009120648.1 106 DGFLWRKYGQKSIKNSKYERSYYRCSYNidhDCGARKHEQQIKENPPVYRTTYFGHHICK 165
                     9**************************9999**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.63699162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-2199165IPR003657WRKY domain
SuperFamilySSF1182901.02E-20101166IPR003657WRKY domain
SMARTSM007741.8E-29104166IPR003657WRKY domain
PfamPF031062.5E-20106165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNSPHEKVVQ AILYGHSCAK RLKLRLEDPM ADDRSVSSYD LAKSIVHCFS NAISILSDQP  60
KSEDDQVSEL SSMDSSPPLP HSKRRKINST NSTKNWRDDS PDPYYDGFLW RKYGQKSIKN  120
SKYERSYYRC SYNIDHDCGA RKHEQQIKEN PPVYRTTYFG HHICKINHNH DAVFTAVEDQ  180
VDDAGSSRII RFGKELDQEK GSHSTGFSLS AKHEESIIKE ETCTDQYREI TGDDKDCQHV  240
MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141061651069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120648.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-124WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLM4CDZ00.0M4CDZ0_BRARP; Uncharacterized protein
STRINGBra002421.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-119WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]