PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120534.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 331aa    MW: 37033.7 Da    PI: 3.907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-1216104191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     ffkv +p d++  + l +p +f +   ++k+ +  +++++  g+ W++kl   k+ g     + + +GWk+ vk+ +Lk g+f+ F++dg++ f+
  XP_009120534.1  16 FFKVYLPDDSG--DDLDIPISFNSF--LPKPLPEYIIVRSIYGNIWKLKL--MKCCGDdvdkVSMVNGWKRIVKDEDLKGGEFLAFEFDGSRLFN 104
                     78888666655..459******743..56779999***************..55555455679999*********************99866664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-189113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-159110IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-1314108No hitNo description
PROSITE profilePS5086311.30714111IPR003340B3 DNA binding domain
SMARTSM010191.3E-1216111IPR003340B3 DNA binding domain
PfamPF023621.2E-916104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-7227328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-10227324IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNKGTGDSSD DCLPKFFKVY LPDDSGDDLD IPISFNSFLP KPLPEYIIVR SIYGNIWKLK  60
LMKCCGDDVD KVSMVNGWKR IVKDEDLKGG EFLAFEFDGS RLFNFCIYGQ ATCKRLGSSV  120
KTKEITDESE GEDGKSCVDV IVIDDDSTDD DDDVSSGQEV DDDDDDDDDV IVIDDDDDDD  180
DDEDDDGDDD EAADDEDVDV DVDVEADDVD DGMETDDGDE HRQLLDDPDS PSFTVILNPK  240
KKSQLLIPSH IMKDYNLHFT ERITIVDPLV PKFGTLERKI KLQDNGCLFV KGFGSVFRRN  300
NVKTTDTIIC EVKKNGNDVA HILKVHIVRG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1261131104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565805.11e-165B3 domain-containing protein At5g60130-like isoform X3
SwissprotQ9LVG11e-105Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLR0GU011e-104R0GU01_9BRAS; Uncharacterized protein
STRINGBostr.26833s0221.1.p1e-116(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.14e-59B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]