PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120533.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 290aa    MW: 32525 Da    PI: 4.1349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1514104194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv +p+d++    l +p +f  ++  + +   +k +t+++ +g +W++kl+  ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg++ f++
  XP_009120533.1  14 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLKKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGSRLFNF 102
                     889997766665..59******8.66543.3..45569999***********666888888*************************999777755 PP

                     EE CS
              B3  93 vv 94 
                     +v
  XP_009120533.1 103 CV 104
                     54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-176107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-197109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11112108IPR003340B3 DNA binding domain
CDDcd100171.28E-1412105No hitNo description
SMARTSM010192.5E-1314108IPR003340B3 DNA binding domain
PfamPF023629.1E-1314104IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-11186283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-7186287IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKKGDSSDDR LPKFFKVYLP NDSGDDLEIP VSFNSCLPSS VPKSVTVTNI NGHVWKLKLK  60
KLSGDPEKFS MVDGWKRIVK DEDLKGGEFL AFEFDGSRLF NFCVYGQATC KKLGKSAEVD  120
DDDDDDDDVI VIDDDDDDDD DEDDDGDDDE AADDEDVDVD VDVEADDVDD GMETDDGDEH  180
RQLLDDPDSP SFTVILNPKK KSQLLIPSHI MKDYNLHFTE RITIVDPLVP KFGTLERKIK  240
LQDNGCLFVK GFGSVFRRNN VKTTDTIICE VKKNGNDVAH ILKVHIVRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1441101104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.261970.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120533.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
SwissprotQ9LVG11e-98Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A3P6D0P01e-159A0A3P6D0P0_BRACM; Uncharacterized protein (Fragment)
STRINGBo9g141110.11e-159(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.15e-53B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]