PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120532.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 292aa    MW: 32725.2 Da    PI: 4.1349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.2e-1516106194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv +p+d++    l +p +f  ++  + +   +k +t+++ +g +W++kl+  ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg++ f++
  XP_009120532.1  16 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLKKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGSRLFNF 104
                     889997766665..59******8.66543.3..45569999***********666888888*************************999777755 PP

                     EE CS
              B3  93 vv 94 
                     +v
  XP_009120532.1 105 CV 106
                     54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-178109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-199111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11114110IPR003340B3 DNA binding domain
CDDcd100171.26E-1414107No hitNo description
SMARTSM010192.5E-1316110IPR003340B3 DNA binding domain
PfamPF023629.2E-1316106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-7188289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-11188285IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKKVTGDSSD DRLPKFFKVY LPNDSGDDLE IPVSFNSCLP SSVPKSVTVT NINGHVWKLK  60
LKKLSGDPEK FSMVDGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCVYGQA TCKKLGKSAE  120
VDDDDDDDDD VIVIDDDDDD DDDEDDDGDD DEAADDEDVD VDVDVEADDV DDGMETDDGD  180
EHRQLLDDPD SPSFTVILNP KKKSQLLIPS HIMKDYNLHF TERITIVDPL VPKFGTLERK  240
IKLQDNGCLF VKGFGSVFRR NNVKTTDTII CEVKKNGNDV AHILKVHIVR GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1461121104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.261970.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120532.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X1
SwissprotQ9LVG15e-97Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A078GYP31e-161A0A078GYP3_BRANA; BnaA10g12960D protein
STRINGBo9g141110.11e-157(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.16e-52B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]