PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120397.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 302aa    MW: 35249.9 Da    PI: 8.6793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.1e-171658244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    ri n+  r +t+ kRr+ + KKA E S+LC+++ ++i++++t 
  XP_009120397.1 16 RITNDKTRMTTYKKRRACLYKKAGEFSTLCGVQTCLIVYGPTK 58
                    89**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-12666IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-8929IPR002100Transcription factor, MADS-box
CDDcd002663.85E-231088No hitNo description
SuperFamilySSF554556.15E-181294IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.4791267IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161658IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRVQKMAHEK VVDLQRITND KTRMTTYKKR RACLYKKAGE FSTLCGVQTC LIVYGPTKAT  60
DEVISKPEIW PEDETKARDI IRRYRDTASN SCRKEAHVET FVNDKGKAKE TENTNNNNNN  120
NKRGMNNKNK YCCWEERLEK CSQEQLRGIF DDVGNKLHEA IMRQNRRAQH QAMEPQTPQN  180
LMDPYYMSQY FAGYQQQQCL MFPYHNMSFP LFSPHDDQIP MEPILVENFA DSSGVNQGFM  240
MSKGNESTQF MQRQAPYYIE PVVQRSASFN VNPFTGYQVP YNVPRLPANQ AEVWDFMAKK  300
PI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120397.10.0PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_013716637.20.0agamous-like MADS-box protein AGL82
SwissprotQ9FIM01e-120AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBLA0A3P6CH930.0A0A3P6CH93_BRACM; Uncharacterized protein
STRINGBra002611.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-116AGAMOUS-like 82
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]