PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009120380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 572aa MW: 62843.4 Da PI: 5.0456 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.3e-08 | 248 | 268 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C +aHg XP_009120380.1 248 PCPEFRK-GSCSRGDSCEYAHG 268 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 7.46E-15 | 9 | 136 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.82E-15 | 11 | 156 | No hit | No description |
Pfam | PF12796 | 3.4E-10 | 52 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0044 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.796 | 57 | 133 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-15 | 57 | 157 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0019 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.778 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.5E-5 | 243 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 247 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 248 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 248 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 276 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.136 | 278 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 278 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRLG SKKMGFEERT 60 PLMIAALFGS KEIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLNASA 120 DPESRDADGS KPVDVMTFPC LSPVFSGRKK VLERLLNGNE ADVQEEEAEV EVEVEVLLSP 180 PRKEYPIDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR 240 KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDETNC SRRVCFFAHK 300 PDELRPLYTS TGSGVPSPRS SFSSCNDMGP ISPLPPLSPN GGMLTTPPLS PNGIPSPIGS 360 GKPWMNWPSA TPPTLHLPGS RLKSALNARE FNFSEEIHQS LASPGRWNNN NTAASPPFSG 420 NGMKRLSSGG ISPVHSLSDM FGASSLSSSP VGANYQFSMD SLASRAAAFA NQRSQSFIES 480 NNQQHPVTTT CLDDWGSLDG KLDWSVNGDE LQDLRNSTSF RLRAGSMESR TPTELEEPDV 540 SWVEPLVKEP QETRVAPVWM EQSYMETEQT VA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009120380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120378.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Refseq | XP_009120379.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Refseq | XP_009120380.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | M4CEK1 | 0.0 | M4CEK1_BRARP; Uncharacterized protein | ||||
STRING | Bra002632.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |