PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120379.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 572aa    MW: 62843.4 Da    PI: 5.0456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08248268526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  XP_009120379.1 248 PCPEFRK-GSCSRGDSCEYAHG 268
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.46E-159136IPR020683Ankyrin repeat-containing domain
CDDcd002041.82E-1511156No hitNo description
PfamPF127963.4E-1052126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
PROSITE profilePS5029714.79657133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1557157IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001992124IPR002110Ankyrin repeat
PROSITE profilePS500889.77892127IPR002110Ankyrin repeat
SMARTSM003562.5E-5243269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4247270IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6248268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619248270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4276306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.136278302IPR000571Zinc finger, CCCH-type
SMARTSM0035620278301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KEIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLNASA  120
DPESRDADGS KPVDVMTFPC LSPVFSGRKK VLERLLNGNE ADVQEEEAEV EVEVEVLLSP  180
PRKEYPIDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR  240
KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDETNC SRRVCFFAHK  300
PDELRPLYTS TGSGVPSPRS SFSSCNDMGP ISPLPPLSPN GGMLTTPPLS PNGIPSPIGS  360
GKPWMNWPSA TPPTLHLPGS RLKSALNARE FNFSEEIHQS LASPGRWNNN NTAASPPFSG  420
NGMKRLSSGG ISPVHSLSDM FGASSLSSSP VGANYQFSMD SLASRAAAFA NQRSQSFIES  480
NNQQHPVTTT CLDDWGSLDG KLDWSVNGDE LQDLRNSTSF RLRAGSMESR TPTELEEPDV  540
SWVEPLVKEP QETRVAPVWM EQSYMETEQT VA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120378.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_009120379.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_009120380.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM4CEK10.0M4CEK1_BRARP; Uncharacterized protein
STRINGBra002632.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein