PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009120188.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HRT-like

Protein Properties

Length: 484aa MW: 54328.8 Da PI: 9.6407

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009120188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	278	308	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil++G C+r+PvkgRKRCeeHKG+R+ XP_009120188.1 278 VCGVILGNGGRCNRSPVKGRKRCEEHKGQRV 308 7*****************************7 PP
2	HRT-like	50.6	3.3e-16	334	364	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C++ Pv+gRKRCe HKGmRi XP_009120188.1 334 TCGVILPNMEPCSKRPVPGRKRCEDHKGMRI 364 7*****************************7 PP
3	HRT-like	26.6	1e-08	404	430	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ +g KRC++HK XP_009120188.1 404 CEATTKSGVPCTRSSPEGSKRCWQHKE 430 99************************7 PP
4	HRT-like	59.4	5.6e-19	450	480	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ ++G vC+r+PvkgRKRCeeHKGmR+ XP_009120188.1 450 ICGVKVSNGLVCERSPVKGRKRCEEHKGMRV 480 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNFGDGSFFA VVPTVYKREE YKRTKHDAVF SKWKILIGSN DWEDFKNGKD GVARYRVQNL 60 PRRSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQSYGRS GAHLRRVNNN 120 NLNDCEAIES PDKKTVTAGL FEDIFFKDGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN 180 KGSNGERRQL DLLIKLGDRE FMRSRKSGIS RVLFPFLRNQ VGIRIKGEKH VLEEERKLSS 240 DVVEEKKKSF GFLASIIKLS RSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC 300 EEHKGQRVCR VSPVKQHPES SVGQDYNHED SDVTCGVILP NMEPCSKRPV PGRKRCEDHK 360 GMRINAFLFL LNRTDREKTV KTEKSDPEPP TGNIAEEEAL SRFCEATTKS GVPCTRSSPE 420 GSKRCWQHKE KSSDDSLPVK AHPVAGTQVI CGVKVSNGLV CERSPVKGRK RCEEHKGMRV 480 IIPS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNFGDGSFFA VVPTVYKREE YKRTKHDAVF SKWKILIGSN DWEDFKNGKD GVARYRVQNL  60
PRRSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQSYGRS GAHLRRVNNN  120
NLNDCEAIES PDKKTVTAGL FEDIFFKDGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN  180
KGSNGERRQL DLLIKLGDRE FMRSRKSGIS RVLFPFLRNQ VGIRIKGEKH VLEEERKLSS  240
DVVEEKKKSF GFLASIIKLS RSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC  300
EEHKGQRVCR VSPVKQHPES SVGQDYNHED SDVTCGVILP NMEPCSKRPV PGRKRCEDHK  360
GMRINAFLFL LNRTDREKTV KTEKSDPEPP TGNIAEEEAL SRFCEATTKS GVPCTRSSPE  420
GSKRCWQHKE KSSDDSLPVK AHPVAGTQVI CGVKVSNGLV CERSPVKGRK RCEEHKGMRV  480
IIPS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269\|PubMed:22226340}.
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269\|PubMed:17991462}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009120188.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120188.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	M4CF10	0.0	M4CF10_BRARP; Uncharacterized protein
STRING	Bra002792.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2