PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120111.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 324aa    MW: 36998.4 Da    PI: 5.4737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.41.1e-091913211128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                     de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l g kk
  XP_009120111.1  19 DELILLRYLKPMIDDGASWPQHFGEDADVFNKNPSTVF-----NPENTVFLIVNPRTEACGKTDGC--EYGSWRIMARDKLIKNEvTGKLLGFKK 106
                     5556789******99996665678999*********95.....44567788888888777755544..689************9989999***** PP

             NAM 105 tLvfykgrapkge..ktdWvmheyrl 128
                     +L f  +++++g+  k +Wvm+e+rl
  XP_009120111.1 107 ILKFCVKKTKRGReyKRSWVMEEFRL 132
                     *****666666654499*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.6969147IPR003441NAC domain
PfamPF023654.4E-619132IPR003441NAC domain
SuperFamilySSF1019413.4E-1919145IPR003441NAC domain
PROSITE profilePS5100515.671173324IPR003441NAC domain
SuperFamilySSF1019411.83E-20176322IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAAAGDYLGI RDDLMGAGDE LILLRYLKPM IDDGASWPQH FGEDADVFNK NPSTVFNPEN  60
TVFLIVNPRT EACGKTDGCE YGSWRIMARD KLIKNEVTGK LLGFKKILKF CVKKTKRGRE  120
YKRSWVMEEF RLLNPKQDHV ICKIRLLFHA EIGFLLSKHF SYSSGPLPAT QSLPAYGYGF  180
PNPEYEGAYY LRSLIDHENE WPSYVANDVF CMHPSALVDP HRDQMFAESG ICIFANRTEA  240
CGYTDGCDGG CWRIMEGDKP IASIMEGETF GYRRVFKFCE ADGTAKYSYT DPYGEVVFLT  300
WIMEEYRLAE EEMKDKVLCV IKLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120111.10.0PREDICTED: uncharacterized protein LOC103845036
TrEMBLM4CF750.0M4CF75_BRARP; Uncharacterized protein
STRINGBra002857.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-113NAC domain containing protein 23