PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009119842.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 232aa MW: 27294 Da PI: 7.4962

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.1	1.1e-25	120	170	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl XP_009119842.1 120 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 170 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	107	192	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	123	170	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDPNSLQPLD SMKIENQYEP DSLFDMLERL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF 60 FENIEVNNTI SSDILMLTQE PYFSSDSSSP LVVQNNHCPS TNERREKKAP KKRNTRAKRQ 120 DKLELSEIRK YFDRPIMKAA KELNVGLTVL KKRCRELEIY RWPHRKLKSL NSLISNLKGV 180 GMDEEVKNLE EHRVLIEQEP DAELTDGTKK LRQACFKAKY KRKKSLANDG YY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119842.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119842.1	1e-171	PREDICTED: protein RKD4
Refseq	XP_013726811.1	1e-171	protein RKD4
Swissprot	Q9LVU8	1e-114	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078IEW6	1e-170	A0A078IEW6_BRANA; BnaA10g06400D protein
TrEMBL	A0A397XRA8	1e-170	A0A397XRA8_BRACM; Uncharacterized protein
TrEMBL	M4CFV6	1e-170	M4CFV6_BRARP; Uncharacterized protein
STRING	Bra003088.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-106	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]