PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009119657.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 299aa MW: 34268.2 Da PI: 6.2918

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.8	2.9e-38	5	127	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +GfrF Ptdee+v++yL+ k g + +++++i++vdi+++ePw+Lp k + +++++ wyfF ++d+ky++g+r++r+t+sg+Wk+tg ++e+++ XP_009119657.1 5 VGFRFIPTDEEIVDYYLRLKNLGGDtSHVDKAISTVDICSFEPWELPsKsRRESRDQIWYFFGRKDNKYNRGERQSRKTRSGFWKKTGVTTEIIR 99 7***************99877773666677***********433445577799*******************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyr 127 k ++e++g k++Lvf+ + k +Wvmhey XP_009119657.1 100 KrgNREKIGEKRVLVFH--S-----KPEWVMHEYV 127 9777888******..3.....556****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.467	3	146	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-40	4	146	IPR003441	NAC domain
Pfam	PF02365	3.9E-22	5	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSRRESRD 60 QIWYFFGRKD NKYNRGERQS RKTRSGFWKK TGVTTEIIRK RGNREKIGEK RVLVFHSKPE 120 WVMHEYVSTF LTPTQTTYTV CKIIFKDDPR DLSSSSSSAP GGGGEVEHNH SQFTHMNNSG 180 EFEGLQNQRH FTGLLDAEKE TQIHDALCRG LDNVSTHDLN SFINCGNNDE EEHGNLLFMQ 240 ENRNDYRPKM SLTGFIDHSD DEDSDSDLIS ATTTISLILL WAPSKPRALV IVLVAQIVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	2e-22	6	126	23	143	NAC domain-containing protein 19
3swm_B	2e-22	6	126	23	143	NAC domain-containing protein 19
3swm_C	2e-22	6	126	23	143	NAC domain-containing protein 19
3swm_D	2e-22	6	126	23	143	NAC domain-containing protein 19
3swp_A	2e-22	6	126	23	143	NAC domain-containing protein 19
3swp_B	2e-22	6	126	23	143	NAC domain-containing protein 19
3swp_C	2e-22	6	126	23	143	NAC domain-containing protein 19
3swp_D	2e-22	6	126	23	143	NAC domain-containing protein 19
4dul_A	2e-22	6	126	20	140	NAC domain-containing protein 19
4dul_B	2e-22	6	126	20	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119657.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119657.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	5e-91	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW3	0.0	M4EWW3_BRARP; Uncharacterized protein
STRING	Bra033298.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	8e-88	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]