PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119653.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 459aa    MW: 51091.9 Da    PI: 5.3747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.74.1e-3541422127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     p+G+rF+Ptdee+v +y ++k  +++  +++ev+++vdiy+++Pw+Lp k ++k++++  wyfF ++++ ++  ++++r+t+sg+W++tg ++++
  XP_009119653.1   4 PVGYRFRPTDEEIVGHYVRPKNLESNtSHVDEVMNTVDIYSFDPWELPcKsRIKSRDEvVWYFFGCKKQMHN--NKQRRSTASGFWSKTGDTTPI 96 
                     89*****************99665553788889**************96347777766799***99988765..6889999************** PP

             NAM  93 lsk..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                     ++k  ++e++g k+++vf          k ++++ +k+dWvmhey 
  XP_009119653.1  97 IRKkgDHEKIGEKRVFVFKysskipggsKSKSKSKSKSDWVMHEYV 142
                     **9777788*********889988888767788889*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-373165IPR003441NAC domain
PROSITE profilePS5100538.2853165IPR003441NAC domain
PfamPF023651.7E-214142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MVDPVGYRFR PTDEEIVGHY VRPKNLESNT SHVDEVMNTV DIYSFDPWEL PCKSRIKSRD  60
EVVWYFFGCK KQMHNNKQRR STASGFWSKT GDTTPIIRKK GDHEKIGEKR VFVFKYSSKI  120
PGGSKSKSKS KSKSDWVMHE YVATFSSPDS QTMMMTYTVC KVMFKGDPTD LPSSSAAASV  180
GSGEIEQNHS PITHMNSNSS GGLSTETEVQ NPNQTTTVSL IPVNNSSEGL STEAEVEYRD  240
RGGRSHQITS SISLVPHVNN NNSGGLSTET EVDPRLFSGF LYLEEDARIE DATLRAFNSL  300
PNNDDAEEQE ELVNLWSMQE DRNDHRPKMP LTGFISDDDD SDSESLYATT TCSIKSSTTC  360
VSFASSNPPI DQIIYLPESP RSTIESVSLT QEVSKALGAN SAISEKKMSP CDDDAQVSEI  420
GGDQMGQEMV IKNKRAGFIY RMIQKFAKKI KLCSCVSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-19414116138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119653.10.0PREDICTED: NAC domain-containing protein 5-like isoform X2
TrEMBLM4EWW50.0M4EWW5_BRARP; Uncharacterized protein
STRINGBra033300.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.16e-63NAC domain containing protein 5