PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119349.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 511aa    MW: 59170.4 Da    PI: 4.5995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.52.2e-2251362128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra......tksgyWkatgk 88 
                     p+G rF+Pt+  lv+ +Lk+kve++      +ik++++y   Pw L++ ++   +++ewy+F++r+ +  +    +r+         g+Wk+ gk
  XP_009119349.1   5 PRGSRFQPTELGLVKLHLKNKVEKNIS---GFIKTLNVYGDAPWLLHHDTNPlySRNEWYYFVPRKIRGVR--SVSRMvpsngdSLGGTWKSVGK 94 
                     89********************99874...46**************85332233778*******9876553..33343222332559******** PP

             NAM  89 dkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128
                       e++++++el+g k++Lvf k  + + + ektdW m+ey+l
  XP_009119349.1  95 IIEIKKNDKELMGYKRVLVFKKyvAGKLEKEKTDWHMDEYSL 136
                     ********************85223455569*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-263152IPR003441NAC domain
PROSITE profilePS5100529.0494154IPR003441NAC domain
PfamPF023654.6E-155136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MRTYPRGSRF QPTELGLVKL HLKNKVEKNI SGFIKTLNVY GDAPWLLHHD TNPLYSRNEW  60
YYFVPRKIRG VRSVSRMVPS NGDSLGGTWK SVGKIIEIKK NDKELMGYKR VLVFKKYVAG  120
KLEKEKTDWH MDEYSLHRNG DEFHDLVLCH VRLLHSDERF KPHVPAAHQV DHVKKDNNNN  180
NDVVLPNQEQ QEAGSAMQGY EGGNVNQPQQ QPEEQEDYIL VDRHLRSNHN QRQNLLEDVV  240
YPNGRGDFNQ HQQQQQDQED SLNLLHPPFQ TNVNQEHYPL GDIAYHNAEG DMTGYGLMPS  300
FNQGNDVNQQ QDSPDPLLLP PLQQSNDNQE PHPLDDIAFD DNLTIDIDEL LKILDEGKEQ  360
EDPPTLQSNV NQEPCLSWDT NFAPSQVENN YNNNNTVLPK QEQREGGFAN HYDMTMMVEK  420
EHGDIKQQYQ QQQDQELQHI DLQTLLLDPE WDDLRCDFCG PEVGLILQNM EVSMTQQEEQ  480
EVQEEILKRM LEPVPQPQDS GVHADQVMPK D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510860.10.0PREDICTED: uncharacterized protein LOC103844301
TrEMBLM4EX700.0M4EX70_BRARP; Uncharacterized protein
STRINGBra033406.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-31NAC domain containing protein 6