PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119137.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 480aa    MW: 55525.7 Da    PI: 5.1515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.11e-5461331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v 
  XP_009119137.1   6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKaLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 
                     79****************************.99***************6335667999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++g+kktLv+y+grap+g +t Wvmheyrl
  XP_009119137.1 100 W-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                     9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-624157IPR003441NAC domain
PROSITE profilePS5100560.9356157IPR003441NAC domain
PfamPF023657.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKALLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETQCEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG  180
NSSFDACSDL EISSTTHQVQ NAFQPRFGNG RFNSNAMISN EDWSQYYGSS YAPFPTPYKV  240
NNEIECSMLQ HNMSLPPLRV ENSAVSDCDF FTSMTQNNNH GVLEDFTFAT SGSNHYNSVG  300
DQVIHIGNYD EPPLMMSNHH MNQGYTEEQK IISTLDDTEQ DLGYHGENTN DNINIDDFFS  360
FDIYNEENIN QVEGNEEEVN TNETLDSSHF EVVEEETRFN NQMLISTYQT TKILYHQVVP  420
SHTLKVHINP INHNVEERTL FIEEEDNDSW LQRAEKITKK KLTLVGVMAQ QCYKYLAIFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-56115712165NO APICAL MERISTEM PROTEIN
1ut4_B9e-56115712165NO APICAL MERISTEM PROTEIN
1ut7_A9e-56115712165NO APICAL MERISTEM PROTEIN
1ut7_B9e-56115712165NO APICAL MERISTEM PROTEIN
3swm_A9e-56115715168NAC domain-containing protein 19
3swm_B9e-56115715168NAC domain-containing protein 19
3swm_C9e-56115715168NAC domain-containing protein 19
3swm_D9e-56115715168NAC domain-containing protein 19
3swp_A9e-56115715168NAC domain-containing protein 19
3swp_B9e-56115715168NAC domain-containing protein 19
3swp_C9e-56115715168NAC domain-containing protein 19
3swp_D9e-56115715168NAC domain-containing protein 19
4dul_A9e-56115712165NAC domain-containing protein 19
4dul_B9e-56115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00329DAPTransfer from AT3G03200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119137.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119137.10.0PREDICTED: NAC domain-containing protein 45
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLM4DXX00.0M4DXX0_BRARP; Uncharacterized protein
STRINGBra021366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]