PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009118612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 372aa MW: 41709.7 Da PI: 7.3478 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.9e-11 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H++ XP_009118612.1 42 PGEPDCSYYIRTGLCRFGSTCRFNHPR 68 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G +CkF+H++ XP_009118612.1 89 QPECEYYLKTGTCKFGVTCKFHHPR 113 799********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.8e-12 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f+rtG+Ck+G++CkF+H++ XP_009118612.1 135 EVDCAYFLRTGHCKFGATCKFNHPQ 159 578********************97 PP | |||||||
4 | zf-CCCH | 37.2 | 4.8e-12 | 250 | 276 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G CkF+H++ XP_009118612.1 250 PGQPECQFYMKTGDCKFGTVCKFHHPR 276 5789*********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.8e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF+H++ XP_009118612.1 296 PGEPVCVFYSRYGICKFGPSCKFNHPM 322 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.0E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-8 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 46 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.108 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-10 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 249 | 276 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 249 | 277 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 251 | 276 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 253 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 255 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-7 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 295 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-9 | 297 | 322 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-6 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 300 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDFNAGVPMS SLSPLLINQE AMWQMNLSSD ETMETGSYPE RPGEPDCSYY IRTGLCRFGS 60 TCRFNHPRDR ELVIATARMR GEYPERIGQP ECEYYLKTGT CKFGVTCKFH HPRNKAGVAG 120 RVSLNMLGYP LRSNEVDCAY FLRTGHCKFG ATCKFNHPQP QPTTNLMVPT SGQQQSYPWS 180 RASFIASPRW QDPSGFTPLM MPQGVVWNPY SLGSVSPSGT GNEHNNYRNM QQNESGSSVQ 240 PSENVFPERP GQPECQFYMK TGDCKFGTVC KFHHPRDRQP PSPDCLLSPI GLPLRPGEPV 300 CVFYSRYGIC KFGPSCKFNH PMEIFAYDNT ASETDEVVET SRGDSRRVSV SETRQATTTT 360 SGQDTPTDTQ QQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17220 | 1e-145 | bud| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009118612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117978 | 0.0 | AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10. | |||
GenBank | BT025966 | 0.0 | BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118612.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X2 | ||||
Swissprot | Q8GXX7 | 0.0 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A398AZV5 | 0.0 | A0A398AZV5_BRACM; Uncharacterized protein | ||||
STRING | Bo1g155120.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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