PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118604.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 374aa    MW: 41894.9 Da    PI: 7.3478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-114268127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  XP_009118604.1 42 PGEPDCSYYIRTGLCRFGSTCRFNHPR 68
                    5789*********************96 PP
2zf-CCCH37.73.5e-1289113327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtCk+G +CkF+H++
  XP_009118604.1  89 QPECEYYLKTGTCKFGVTCKFHHPR 113
                     799********************96 PP
3zf-CCCH382.8e-12135159327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f+rtG+Ck+G++CkF+H++
  XP_009118604.1 135 EVDCAYFLRTGHCKFGATCKFNHPQ 159
                     578********************97 PP
4zf-CCCH37.24.9e-12252278127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G  CkF+H++
  XP_009118604.1 252 PGQPECQFYMKTGDCKFGTVCKFHHPR 278
                     5789*********************96 PP
5zf-CCCH375.8e-12298324127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C f++r+G+Ck+G++CkF+H++
  XP_009118604.1 298 PGEPVCVFYSRYGICKFGPSCKFNHPM 324
                     57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6994169IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-54168IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-84368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-44768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10886114IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-586113IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-492113IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99132160IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22251279IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5251278IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8253278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6255280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4257279IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244297325IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4302323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLLINQE AMWQMNLSSD ETMETGSYPE RPGEPDCSYY IRTGLCRFGS  60
TCRFNHPRDR ELVIATARMR GEYPERIGQP ECEYYLKTGT CKFGVTCKFH HPRNKAGVAG  120
RVSLNMLGYP LRSNEVDCAY FLRTGHCKFG ATCKFNHPQP QPTTNLMVPT SGQQQSYPWS  180
RASFIASPRW QDPSGFTPLM MPQGVVWNPY SGQLGSVSPS GTGNEHNNYR NMQQNESGSS  240
VQPSENVFPE RPGQPECQFY MKTGDCKFGT VCKFHHPRDR QPPSPDCLLS PIGLPLRPGE  300
PVCVFYSRYG ICKFGPSCKF NHPMEIFAYD NTASETDEVV ETSRGDSRRV SVSETRQATT  360
TTSGQDTPTD TQQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.172201e-145bud| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118604.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A398AZV50.0A0A398AZV5_BRACM; Uncharacterized protein
STRINGBo1g155120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]