PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009118548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23988.7 Da PI: 9.9445 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.6 | 9.9e-34 | 28 | 119 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck +r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++++sl++eA +r++dPv G++g +++ +++l+ k+ XP_009118548.1 28 ACASCKRQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRPKLTDSLTWEALWRQKDPVLGSYGEYMRQSEELKLYKS 119 7********************************************************************************99999988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.509 | 27 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-31 | 28 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTLLEGDDMM QRNSNNSNIS NNSPPHQACA SCKRQRKKCN NECILSPYFP ARKTKEFQAV 60 HKVFGVSNVQ KMVRTVREED RPKLTDSLTW EALWRQKDPV LGSYGEYMRQ SEELKLYKSL 120 IHNQSLVTWD NNNNQQRVFN NSNNNKNGSA LNSSGSGGFS VVNNNGVGVN REIINGGYTS 180 RNLQGGWGNL KQDQRQQCYA VINGFKHHLP H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-17 | 29 | 105 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-17 | 29 | 105 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009118548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118547.1 | 1e-154 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9LNB9 | 1e-105 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | M4EUE8 | 1e-147 | M4EUE8_BRARP; Uncharacterized protein | ||||
STRING | Bra032430.1-P | 1e-148 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-86 | LOB domain-containing protein 2 |