PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118268.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 332aa    MW: 36801.8 Da    PI: 5.6506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10183231355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_009118268.1 183 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 231
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.32E-11178235No hitNo description
SuperFamilySSF474596.28E-17178248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.262180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17182248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7183231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDGESNNEGE MGLNHGHDPS MPLYAKTDPY FSSSDWDPVV NGGGFSSSHY PSVVMDNPGM  60
SCFTHFQTAS GYPDMPASLL PFGDCGGGGG ESVGRLMRAG ESHDQVLDDG VLGSSPSRKR  120
RQAEAESQRN KKAVEEYQED TQRGSDQNQK KHKDGQNKES SQSEEAPKEN YIHMRARRGK  180
ATNSHSLAER VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK  240
LATVNPEVNI DIDRIIAKDL LQPRDRNIPT LGLNPFTSFQ GNISTTTNPQ YNPLPQTTLE  300
SELQSLYQMG FVSNPSTMSS FSPNNGRLKP EL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121SRKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218061e-164AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankAK2293091e-164AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBankAK2303471e-164AK230347.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07.
GenBankBT0126551e-164BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118268.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLM4ESC20.0M4ESC2_BRARP; Uncharacterized protein
STRINGBra031700.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]