PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118127.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20951.1 Da    PI: 10.3524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-221861245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ie +s rqv fskRr+g++KKA+EL++LC++eva+i+fs+  k
  XP_009118127.1 18 KIEKESHRQVAFSKRRAGLFKKASELCTLCGVEVAIIVFSPAKK 61
                    69**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-29968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1969IPR002100Transcription factor, MADS-box
CDDcd002651.69E-331086No hitNo description
SuperFamilySSF554551.83E-281089IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-171131IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTSKKKGSTG RQRIRMAKIE KESHRQVAFS KRRAGLFKKA SELCTLCGVE VAIIVFSPAK  60
KPFSFGHPSV YSVLDRYRNN TSFQQQSQPR ENTATRSELS LVLSQLEEEK KKGEEMRKAS  120
EMAKWSVDEM SLLQLQEMRY ALEELRKTMV VPPPSYMNSM STGFSCIYNS SYVHASSRVT  180
YKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-151094283MEF2 CHIMERA
6bz1_B9e-151094283MEF2 CHIMERA
6bz1_C9e-151094283MEF2 CHIMERA
6bz1_D9e-151094283MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118127.11e-134PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_022547594.11e-134agamous-like MADS-box protein AGL61
SwissprotQ4PSU42e-61AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y5G31e-133A0A397Y5G3_BRACM; Uncharacterized protein
STRINGBra026764.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-52AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]